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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGAACCTGGTACTCGCCCTCCTCTTTGCCAGTCTGACGATGACTCAGATGCAGTATGGGGAGTAAATATGAAAGCATGCATAACACCTTACAGTGATCgtgagtactcttttctcagtggtttttttatggtttttgcattccatggattctagcgatttctttgcgagtatcaattcattgttacttctttagtggc...

Basic information

species Glycine max
transcript GLYMA10G32470.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G32470.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G14360.1 (Arabidopsis thaliana), 5'ss of exon 5
AGAGAACCTGGTACTCGCCCTCCTCTTTGCCAGTCTGACGATGACTCAGATGCAGTATGGGGAGTAAATATGAAAGCATGCATAACACCTTACAGTGATCgtgagtactct--tttctcagtggttttt--ttatggtttttgcattccatggattctagcgatttctttgcgagtatcaattcattgttacttctttagtggc
||||||||||| ||||  |||||||||||||  |||||  ||||| | ||||| || ||||| ||||| ||| |||| ||||| ||  |||||||||| ||| |||  ||    ||||    | ||||   | |  |  | |   | |  || | |||     ||| |  |   || | |                        
AGAGAACCTGGAACTCAGCCTCCTCTTTGCCGTTCTGATAATGACCCTGATGCTGTGTGGGGCGTAAACATGGAAGCTTGCATTACTTCTTACAGTGACCgtaagttttcaagcttcttctcgcttttcaataacagcgtatatttcctctgaactct-----tttttggggttgtcttag-----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15813138|gb|BI785413.1|BI785413
EST:     TGCAGTATGGGGAGTAAATATGAAAGCATGCATAACACCTTACAGTGATC                         ATGACAACAGAGCCAAGGGTAGTGGATTAGCTCCATGGCCTGCAAGATTGA
genomic: TGCAGTATGGGGAGTAAATATGAAAGCATGCATAACACCTTACAGTGATCgtgagtactc ... tttatcacagATGACAACAGAGCCAAGGGTAGTGGATTAGCTCCATGGCCTGCAAGATTGA
EST: gi|8827658|gb|BE211388.1|BE211388
EST:     TGCAGTATGGGGAGTAAATATGAAAGCATGCATAACACCTTACAGTGATC                         ATGACAACAGAGCCAAGGGTAGTGGATTAGCTCCATGGCCTGCAAGATTGA
genomic: TGCAGTATGGGGAGTAAATATGAAAGCATGCATAACACCTTACAGTGATCgtgagtactc ... tttatcacagATGACAACAGAGCCAAGGGTAGTGGATTAGCTCCATGGCCTGCAAGATTGA
EST: gi|11688443|gb|BF596119.1|BF596119
EST:     TGCAGTATGGGGAGTAAATATGAAAGCATGCATAACACCTTACAGTGATC                         ATGACAACAGAGCCAAGGGTAGTGGATTAGCTCCATGGCCTGCAAGATTGA
genomic: TGCAGTATGGGGAGTAAATATGAAAGCATGCATAACACCTTACAGTGATCgtgagtactc ... tttatcacagATGACAACAGAGCCAAGGGTAGTGGATTAGCTCCATGGCCTGCAAGATTGA
EST: gi|207694344|gb|GD677407.1|GD677407
EST:     TGCAGTATGGGGAGTAAATATGAAAGCATGCATAACACCTTACAGTGATC                         ATGACAACAGAGCCAAGGGTAGTGGATTAGCTCCATGGCCTGCAAGATTGA
genomic: TGCAGTATGGGGAGTAAATATGAAAGCATGCATAACACCTTACAGTGATCgtgagtactc ... tttatcacagATGACAACAGAGCCAAGGGTAGTGGATTAGCTCCATGGCCTGCAAGATTGA
EST: gi|151399856|gb|EV269727.1|EV269727
EST:     TGCAGTATGGGGAGTAAATATGAAAGCATGCATAACACCTTACAGTGATC                         ATGACAACAGAGCCAAGGGTAGTGGATTAGCTCCATGGCCTGCAAGATTGA
genomic: TGCAGTATGGGGAGTAAATATGAAAGCATGCATAACACCTTACAGTGATCgtgagtactc ... tttatcacagATGACAACAGAGCCAAGGGTAGTGGATTAGCTCCATGGCCTGCAAGATTGA