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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTAAGTTTGGCGCAGTCTGTCGGTTCCACCACCCACAAGAGAGGCTAGTTCCTGCTCCTAACTGTGTCTTGAGTCCCATAGGCCTTCCTTTACGTCCTgtaagttgggtttctatctacctagttggtttttcataggcttaaattcattatttctgaatttattgagaagttctgaatttaagaagtatcatatcat...

Basic information

species Glycine max
transcript GLYMA10G31370.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G31370.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0023g00370.t01 (Vitis vinifera), 5'ss of exon 6
TTGTAAGTTTGGCGCAGTCTGTCGGTTCCACCACCCACAAGAGAGGCTAGTTCCTGCTCCTAACTGTGTCTTGAGTCCCATAGGCCTTCCTTTACGTCCTgtaagttgggtttctatctacctagttggtttttcataggcttaaat-tcattatttctgaatttattgagaagttctga-atttaagaagtatcatatcat-
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TTGTAAGTTTGGTGCGGTTTGTAGGTTCCATCATCCCAGAGAAAGACTGATCCCTACTCCGGATTGTGTTTTGAGTCCCATAGGCCTCCCTTTACGTCCGgtgagttgcctctttgcttttcagttttgttttccat---tttggttattggtattgtagcatatggcaaatgtctttactgtttcttgggttttgcttctga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13312087|gb|BG405738.1|BG405738
EST:     TTCCTGCTCCTAACTGTGTCTTGAGTCCCATAGGCCTTGCTTTACGTTCT                         GGAGAACCTTTGTGTGTCTTCTATTCTCGTTATGGCATATGCAAATTTGGC
genomic: TTCCTGCTCCTAACTGTGTCTTGAGTCCCATAGGCCTTCCTTTACGTCCTgtaagttggg ... tttcttacagGGAGAACCTTTGTGTGTCTTCTATTCTCGTTATGGCATATGCAAATTTGGC
EST: gi|10843882|gb|BF067236.1|BF067236
EST:     TTCCTGCTCCTAACTGTGTCTTGAGTTCCATAGGCCTTCCTTTACGTACT                         GGAGAACCTTTGTGTGTCTTCTATTCTCGTTATGGCATATGCAAATTTTGG
genomic: TTCCTGCTCCTAACTGTGTCTTGAGTCCCATAGGCCTTCCTTTACGTCCTgtaagttggg ... tttcttacagGGAGAACCTTTGTGTGTCTTCTATTCTCGTTATGGCATATGCAAATTT-GG