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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGCCTATCTAAAGGTATAGGTGCTCCAGTTGGATCTGTTATTGTTGGTTCCAAGAATTTTATTGCCAAGgtagttcaataattttacagggaaattaatagcaggtagatacttcctgaaagactgatgttgaaatctagtttatctattttttttag

Basic information

species Glycine max
transcript GLYMA10G30880.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30880.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os04g43650.2 (Oryza sativa), 5'ss of exon 5
GTTTGCCTATCTAAAGGTATAGGTGCTCCAGTTGGATCTGTTATTGTTGGTTCCAAGAATTTTATTGCCAAGgtagttcaataattttacagggaaattaatagcaggtagatacttcctgaaagactgatgttgaaatctagtttatctattttttttag
|| ||| ||||||||||  |||| ||||| |||||||| |||||||||||||| | |   || || |  |||||   |    |||| |    |  || |  |  |    |  | |     | | |  | | | || ||     | |    | |  ||| ||
GTGTGCATATCTAAAGGGTTAGGCGCTCCTGTTGGATCAGTTATTGTTGGTTCGACGGCCTTCATAGAAAAGgtctgtt--caattctgtttgttaacttgttaccttaaactgcagatgggatg--taacgatggaa----atatgaacaatgctttcag

upper sequence: GLYMA10G30880.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0036g00520.t01 (Vitis vinifera), 5'ss of exon 6
GTTTGCCTATCTAAAGGTATAGGTGCTCCAGTTGGATCTGTTATTGTTGGTTCCAAGAATTTTATTGCCAAGgtagt--tcaataattttacagggaaattaatagcaggtaga-tacttcctgaaagactgatgttgaaatctagtttatctattttttttag
|| || || || || ||| | |||||||| ||||||  ||| |||||||||||||| | ||||||||| |||||| |  | |   |||||    |   ||||| |   | |    | ||| |  | ||| |   |    || ||  | | | | || ||| |||
GTATGTCTCTCAAAGGGTTTGGGTGCTCCCGTTGGAAGTGTGATTGTTGGTTCCAAAAGTTTTATTGCTAAGgtaataatgagatattttgagtgatcattaacaaaggctcttcttctttcccagagaatctggaatcaagctcttctctttcttctttctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207729253|gb|GD709109.1|GD709109
EST:     TCTGTTATTGTTGGTTCCAAGAATTTTATTGCCAAG                         GCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCCTC
genomic: TCTGTTATTGTTGGTTCCAAGAATTTTATTGCCAAGgtagttcaat ... ttttttttagGCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCCTC
EST: gi|14258404|gb|BG881312.1|BG881312
EST:     GCTCCAGTTGGATCTGTTATTGTTGGTTCCAAGAATTTTATTGCCAAG                         GCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCCTC
genomic: GCTCCAGTTGGATCTGTTATTGTTGGTTCCAAGAATTTTATTGCCAAGgtagttcaat ... ttttttttagGCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCCTC
EST: gi|21993634|gb|BQ785162.1|BQ785162
EST:     GTGCTCCAGTTGGATCTGTTATTGTTGGTTCCAAGAATTTTATTGCCAAG                         GCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCCTC
genomic: GTGCTCCAGTTGGATCTGTTATTGTTGGTTCCAAGAATTTTATTGCCAAGgtagttcaat ... ttttttttagGCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCCTC