Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTTCAGAGCATTGTTAAGAATGAAAATTTGAATGCCAACGTGCATGTTCTTTCATACTGCTGGTGTGGTGACCTCATTAGGTCTACTTTCTCTTCCGgtacatattcctttgcatgagctgtaatttcagtactctttgctatcacttgtattccagttgttaattttcagcaacttttgcatttggaattaaaatc...

Basic information

species Glycine max
transcript GLYMA10G30680.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30680.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0159g00050.t01 (Vitis vinifera), 5'ss of exon 5
TTCTTTCAGAGCATTGTTAAGAATGAAAATTTGAATGCCAACGTGCATGTTCTTTCATACTGCTGGTGTGGTGACCTCATTAGGTCTACTTTCTCTTCCGgtacatat--tcctttgcatgagctgtaatttcagtactctttgctatcacttgtattccagttgttaattttcagcaacttttgcatttggaattaaaatc
|||||||||| |||||| |||||||||| ||||| |||  | || ||| | |||||||| || ||||||||||| || || |||||  | || || || ||||  | |  ||| |   |  |   | |  || || || |||       || | | ||   | |||| | | |    |  ||     | |   ||  || | 
TTCTTTCAGAACATTGTAAAGAATGAAAGTTTGATTGCAGATGTCCATATACTTTCATATTGTTGGTGTGGTGATCTTATCAGGTCAGCATTTTCGTCAGgtatgtttcttccctgatagaaatggcagatttaggac-cttaatgtagacatttgttgacggtgttgaatatattgagtttgcagctattatatggaact-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193419920|gb|FK381988.1|FK381988
EST:     TCTTTCATACTGCTGGTGTGGTGACCTCATTAGGTCTACTTTCTCTTCCG                         CTGATTTAAATGAGTTGAATGTTCATGCTAATGAGTTCACTTATGAGGGAT
genomic: TCTTTCATACTGCTGGTGTGGTGACCTCATTAGGTCTACTTTCTCTTCCGgtacatattc ... ttttgagcagCTGATTTAAATGAGTTGAATGTTCATGCTAATGAGTTCACTTATGAGGGAT