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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATATATTCCTTTGGGATGTGCATATTAGAGATGGTTACATTTGAATATCCTTATAGTGAATGTACTCATCCGGCTCAAATCTACAAAAAAGTTATTTCTgtaagtttgttccctttctctatgtcttgttgataagggattgttcggtggtggtgaaatttcattggcattttctgtctccag

Basic information

species Glycine max
transcript GLYMA10G30210.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30210.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G04910.1 (Arabidopsis thaliana), 5'ss of exon 5
CATATATTCCTTTGGGATGTGCATATTAGAGATGGTTACATTTGAATATCCTTATAGTGAATGTACTCATCCGGCTCAAATCTACAAAAAAGTTATTTCTgtaagtttgttccctttctctatgtcttgttgataagggattgttcggtggtggtgaaatttcattggcattttctgtctccag
 ||||| || || || ||||| || || ||||||||||| ||||| || || || ||||| ||||||||||| ||||| |||||||| |||||||| || || ||  | | |  || ||  |   ||     | ||  | ||  ||  |    ||   |      |   | ||   |  | |||
TATATACTCGTTCGGTATGTGTATTTTGGAGATGGTTACGTTTGATTACCCGTACAGTGAGTGTACTCATCCTGCTCAGATCTACAAGAAAGTTATGTCGgtgagactctccgattactaaaacactaagataaaaaagcttcatctctttctgtttcaaaaggctaaaagtt--cggtttcag

upper sequence: GLYMA10G30210.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv05s0020g03380.t01 (Vitis vinifera), 5'ss of exon 5
CATATATTCCTTTGGGATGTGCATATTAGAGATGGTTACATTTGAATATCCTTATAGTGAATGTACTCATCCGGCTCAAATCTACAAAAAAGTTATTTCTgtaagtttgttccctttctctatgtcttgttgataagggattgttcggtggtggtgaaatttcattggcattttctgtc-tccag
||| ||||| ||||| |||||||| || || |||||||| ||||||||||| || |||||||| || || || ||||| |||||||| |||||||| || ||| |      | |  | ||| | ||   |   |||    |   ||   | |     | || |||  |  |  | |||| | |||
CATCTATTCTTTTGGAATGTGCATCTTGGAAATGGTTACCTTTGAATATCCATACAGTGAATGCACCCACCCCGCTCAGATCTACAAGAAAGTTATCTCCgtaggaac-ccctcagtttctctttcccatatctaactc-tgtctctacgattccccatttacatatgtttcctttgtcatgcag