Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGGACCTCCGGGGACTGGGAAAACATTGATGGCCCGTGCCTGTGCAGCACAGACAAATGCCACTTTTCTGAAATTGGCAGGCCCTCAACTGGTCCAGgtatgacaatttatttctagtttttctttttctccattatatatttgtaagcatgactaatgattccattgttacatgtttgtaccaactaattatacca...

Basic information

species Glycine max
transcript GLYMA10G29250.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G29250.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os06g07630.1 (Oryza sativa), 5'ss of exon 5
ATATGGACCTCCGGGGACTGGGAAAACATTGATGGCCCGTGCCTGTGCAGCACAGACAAATGCCACTTTTCTGAAATTGGCAGGCCCTCAACTGGTCCAGgtatgacaatttatttctagtttttctttttctccattat-atatttgtaagcatgactaatgattccattgttacatgtttgtaccaactaattatacca----
 |||||||| || || |||||||| ||||||||||| ||||| ||||| |||||||||||||| || || |||||||| || || || ||| | |||||||||  |  ||||||||| | |       |   |  ||||| || ||| |     |  ||  |||     ||| ||  | ||||       |    |  | |    
GTATGGACCACCTGGAACTGGGAAGACATTGATGGCTCGTGCATGTGCTGCACAGACAAATGCGACGTTCCTGAAATTAGCTGGTCCACAATTAGTCCAGgta--attatttatttcaattaaaaagctccattgattatcatcttttt---tttttcttgtgaccatgttgatatttatttggtgttcatggggaggcaatagt

upper sequence: GLYMA10G29250.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 5
ATATGGACCTCCGGGGACTGGGAAAACATTGATGGCCCGTGCCTGTGCAGCACAGACAAATGCCACTTTTCTGAAATTGGCAGGCCCTCAACTGGTCCAGgtatgacaatttatttctagtttttctttttctccattatata-tttgtaag----catgactaatgattccattgttacatgtttgtaccaactaattatacca
 |||||||| || ||||||||||||||  | ||||| ||||| || || |||||||||||||| || |||||||||||||| || || ||||| ||||||||| |  |||| | | |  |   |   || |    ||  ||   ||  ||||        |||||  |||  |   ||  |  ||  |       | ||      
GTATGGACCCCCTGGGACTGGGAAAACGCTCATGGCTCGTGCATGCGCTGCACAGACAAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAGgta-ggtaattaaatccgtgaaatatattatacagatgctagggttcctaaggctctccaactaaccatttgagcattttacattc-tgtttgtgatttgcg---

upper sequence: GLYMA10G29250.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G173849_T01 (Zea mays), 5'ss of exon 1
ATATGGACCTCCGGGGACTGGGAAAACATTGATGGCCCGTGCCTGTGCAGCACAGACAAATGCCACTTTTCTGAAATTGGCAGGCCCTCAACTGGTCCAGgtatgacaatttattt-----ctagtttttctttttctccattatatatttgtaagcatgactaatgattccattgttacatgtttgtaccaactaattatacca
 |||||||| || || ||||| || ||| | ||||| ||||| ||||| |||||||| ||||| || ||||||||||| || || || ||||| || || |||   || |||| ||      ||   ||| |||| ||   |||| | |  || |  ||  ||   |  | |||   | |  | |  ||  |  |  || | |  
GTATGGACCGCCAGGAACTGGCAAGACACTCATGGCTCGTGCATGTGCTGCACAGACGAATGCAACATTTCTGAAATTAGCTGGTCCACAACTTGTGCAAgta-atcagtttacttgagaattaagctttattttccttttttatgtgtccgtta-tatagctg-cgcctgcatgccttctcgatgataagatattttttttc--

upper sequence: GLYMA10G29250.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G05530.1 (Arabidopsis thaliana), 5'ss of exon 5
ATATGGACCTCCGGGGACTGGGAAAACATTGATGGCCCGTGCCTGTGCAGCACAGACAAATGCCACTTTTCTGAAATTGGCAGGCCCTCAACTGGTCCAGgtatgacaatttatttcta-gtttttctttttctccattatatatttgtaagcatgactaatgattccat-tgttacatgtttgtaccaactaattatacca-----------------------------------------------------------------------------
 ||||| || || |||||||| ||||| || ||||| |||||||| ||||||||||| |||||||| || || |||||||||||||||||| ||||||||||||    || ||| | ||  | | | | | |    || | || |   |   |||  || |  | ||  |    |   ||  | ||  |  | | | | |                                                                               
GTATGGTCCCCCAGGGACTGGTAAAACTTTAATGGCTCGTGCCTGCGCAGCACAGACCAATGCCACCTTCCTTAAATTGGCAGGCCCTCAATTGGTCCAGgtatatatatatatatatatatatatatatatgagtatcagat-tcaattctcatctcttagaactctttaccctgtctggatataagattttagtgttctggcaacaataattacatgtgacgagctataatgatacttgattgtaatgacatgatgacatatccaatttatatacag

upper sequence: GLYMA10G29250.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G09100.1 (Arabidopsis thaliana), 5'ss of exon 5
ATATGGACCTCCGGGGACTGGGAAAACATTGATGGCCCGTGCCTGTGCAGCACAGACAAATGCCACTTTTCTGAAATTGGCAGGCCCTCAACTGGTCCAGgtatgacaatt--------tatttctagtttttctttttctcc-attatatatttgtaagcatgactaatgattccattgttacatgtttgtaccaactaattatacca
 ||||| ||||| || || || || || ||||||||||| || |||||||||||||||||||| ||||| || ||| | ||||| || ||||| || ||||||||| || |          |  ||  ||||  | ||  |||  | |||| |||  || ||     || |   |  || ||| |  | ||||                
GTATGGTCCTCCTGGAACCGGAAAGACGTTGATGGCCCGAGCTTGTGCAGCACAGACAAATGCAACTTTCCTCAAACTAGCAGGGCCACAACTTGTTCAGgtatgaaaactagagtaaacgtaactgattttgatcttgttcctgtgatattttttgaaccaaacggaaagtaactttttttagacttatgtatag-------------

upper sequence: GLYMA10G29250.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 5
ATATGGACCTCCGGGGACTGGGAAAACATTGATGGCCCGTGCCTGTGCAGCACAGACAAATGCCACTTTTCTGAAATTGGCAGGCCCTCAACTGGTCCAGgtatgacaatttatttctagtttttctttttctccattatatatt-tgtaagcatgactaatgattccattgttacatgttt-gtaccaactaattatacca-----
 ||||||||||| ||||||||||||||  ||||||||||||| || || || || ||||||||||||||||||||  |||||||||||||||| ||||||||  || | | |   | | ||||| ||| |||    |||| | || | | |      |||  |||||     | || ||||  ||| |  || |  || |       
GTATGGACCTCCAGGGACTGGGAAAACTCTGATGGCCCGTGCATGCGCGGCTCAAACAAATGCCACTTTTCTGAAGCTGGCAGGCCCTCAACTTGTCCAGgtgggatattcttcattt-gttttccttcttcattcttatttgttatttgatgccttctagggattct----tgacttgttcagtatc--ctgaaaattctgaggtt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254339477|gb|GR848235.1|GR848235
EST:     CACAGACAAATGCCACTTTTCTGAAATTGGCAGGCCCTCAACTGGTCCAG                         ATGTTCATAGGAGATGGAGCAAAACTTGTTCGTGATGCCTTTCAACTAGCA
genomic: CACAGACAAATGCCACTTTTCTGAAATTGGCAGGCCCTCAACTGGTCCAGgtatgacaat ... ttttgtacagATGTTCATAGGAGATGGAGCAAAACTTGTTCGTGATGCCTTTCAACTAGCA
EST: gi|58017156|gb|CX703898.1|CX703898
EST:     GGCAGGCCCTCAACTGGTCCAG                         ATGTTCATAGGAGATGGAGCAAAACTTGTTCGTGATGCCTTTCAACTAGCA
genomic: GGCAGGCCCTCAACTGGTCCAGgtatgacaat ... ttttgtacagATGTTCATAGGAGATGGAGCAAAACTTGTTCGTGATGCCTTTCAACTAGCA
EST: gi|120530681|gb|EH258814.1|EH258814
EST:     CACAGACAAATGCCACTTTTCTGAAATTGGCAGGCCCTCAACTGGTCCAG                         ATGTTCATAGG
genomic: CACAGACAAATGCCACTTTTCTGAAATTGGCAGGCCCTCAACTGGTCCAGgtatgacaat ... ttttgtacagATGTTCATAGG
EST: gi|254342561|gb|GR858723.1|GR858723
EST:     CACAGACAAATGCCACTTTTCTGAAATTGGCAGGCCCTCAACTGGTCCAG                         ATGTTCATAGGAGATGGAGCAAAACTTGTTCGTGATGCCTTTCAACTAGCA
genomic: CACAGACAAATGCCACTTTTCTGAAATTGGCAGGCCCTCAACTGGTCCAGgtatgacaat ... ttttgtacagATGTTCATAGGAGATGGAGCAAAACTTGTTCGTGATGCCTTTCAACTAGCA
EST: gi|22525777|gb|BU084588.1|BU084588
EST:     CACAGACAAATGCCACTTTTCTGAAATTGGCAGGCCCTCAACTGGTCCAG                         ATGTTCATAGGAGATGGAGCAAAACTTGTTCGTGATGCCTTTCAACTAGCA
genomic: CACAGACAAATGCCACTTTTCTGAAATTGGCAGGCCCTCAACTGGTCCAGgtatgacaat ... ttttgtacagATGTTCATAGGAGATGGAGCAAAACTTGTTCGTGATGCCTTTCAACTAGCA
EST: gi|9901285|gb|BE610253.1|BE610253
EST:     CACAGACGGATGCCACTTTGGTGAAATTGGCAGGCCCTCAACTGGTCCAG                         ATGTTCATAGGAGATGGAGCAAAACTTGTTGCGTGATGCCTTTCAACTAGC
genomic: CACAGACAAATGCCACTTTTCTGAAATTGGCAGGCCCTCAACTGGTCCAGgtatgacaat ... ttttgtacagATGTTCATAGGAGATGGAGCAAAACTTGTT-CGTGATGCCTTTCAACTAGC
EST: gi|298195294|gb|HO043822.1|HO043822
EST:     CACAGACAAATGCCACTTTTCTGAAATTGGCAGGCCCTCAACTGGTCCAG                         ATGTTCATAGGAGGTGGAGCAAAACTTGTTCGTGATGCCTTTCAACTAGCA
genomic: CACAGACAAATGCCACTTTTCTGAAATTGGCAGGCCCTCAACTGGTCCAGgtatgacaat ... ttttgtacagATGTTCATAGGAGATGGAGCAAAACTTGTTCGTGATGCCTTTCAACTAGCA