1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCTTCGCTGTTGGCCTGGTGGATTGTGCCTTTCTAGATCAATTGGTGACACAGACGTGGGAGAATTTATTGTCCCAATACCACATGTCAAGCAAGTGAAGgtaagctagtttcattttgtagtcttagtttattgatcgatggccattatgtggaagtgtttagtactaaatttcagcactcctgaccttctcttattggttccccag
species | Glycine max |
transcript | GLYMA10G29060.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAGACGTGGGAGAATNTATTGTCCCAATACCACATGTCAAGCAAGTGAAG CTATCAAATGCTGGTGGAAGACTTATTATAGCTTCTGATGGTATTTGGGATEST: gi|37996834|gb|CF808423.1|CF808423
genomic: CAGACGTGGGAGAATTTATTGTCCCAATACCACATGTCAAGCAAGTGAAGgtaagctagt ... ggttccccagCTATCAAATGCTGGTGGAAGACTTATTATAGCTTCTGATGGTATTTGGGAT
EST: CAGACGTGGGAGAATTTATTGTCCCAATACCACATGTCAAGCAAGTGAAG CTATCAAATGCTGGTGGAAGACTTATTATAGCTTCTGATGGTATTTGGGATEST: gi|37995750|gb|CF807339.1|CF807339
genomic: CAGACGTGGGAGAATTTATTGTCCCAATACCACATGTCAAGCAAGTGAAGgtaagctagt ... ggttccccagCTATCAAATGCTGGTGGAAGACTTATTATAGCTTCTGATGGTATTTGGGAT
EST: CAGACGTGGGAGAATTTATTGTCCCAATACCACATGTCAAGCAAGTGAAG CTATCAAATGCTGGTGGAAGACTTATTATAGCTTCTGATGGTATTTGGGATEST: gi|57574161|gb|CX547136.1|CX547136
genomic: CAGACGTGGGAGAATTTATTGTCCCAATACCACATGTCAAGCAAGTGAAGgtaagctagt ... ggttccccagCTATCAAATGCTGGTGGAAGACTTATTATAGCTTCTGATGGTATTTGGGAT
EST: TACCACATTGTC-AGCAAAGTGAAG CTATCAAATGCTGGTGGAAGACTTATTATAGCTTCTGATGGTATTTGGGA
genomic: TACCACA-TGTCAAGC-AAGTGAAGgtaagctagt ... ggttccccagCTATCAAATGCTGGTGGAAGACTTATTATAGCTTCTGATGGTATTTGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTCGCTGTTGGCCTGGTGGATTGTGCCTTTCTAGATCAATTGGTGACACAGACGTGGGAGAATTTATTGTCCCAATACCACATGTCAAGCAAGTGAAGgtaagctagtttcattttgtagtcttagtttattgatcgatggccattatgtggaagtgtttagtactaaatttcagcactcctgaccttctcttattggttccccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG