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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTCACTCATAAGGCTTCAAGCTGATTATCTCCTTGTTGTAGGAGTGTGTCTGACCCTCAGCATTGCAAATATTGTTGGTTTTACCAAATGCAAAAAAGgtcagtaagtttattgataatattcttaaaatgtatgtttcccaattcccactctcctaatatagcaaaattgttttaggttggaggaattgtctgcata...

Basic information

species Glycine max
transcript GLYMA10G28620.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G28620.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g22870.1 (Oryza sativa), 5'ss of exon 5
TTCTCACTCATAAGGCTTCAAGCTGATTATCTCCTTGTTGTAGGAGTGTGTCTGACCCTCAGCATTGCAAATATTGTTGGTTTTACCAAATGCAAAAAAGgtcagtaagtt-tattgataatattcttaaaatgtatgtttcccaattcccactctcctaatatagcaaaattgttttaggttggaggaattgtctgcata-----
||||||||||| || ||||| |||||||| || |||||||| ||||| ||  |||  |||||||| ||||| |||||||| || ||||| ||||| |||||| ||  | || | ||||  | | |       |    |||    || ||       | |   || | || ||    ||  ||| ||||| || | |   |      
TTCTCACTCATCAGACTTCATGCTGATTACCTTCTTGTTGTTGGAGTTTGCTTGAGTCTCAGCATAGCAAACATTGTTGGCTTCACCAAGTGCAACAAAGgtgagagacttctcttgaagagaattccgtgtttctcgttagaaaagtcta-----catggcat-gtaagatgcaattctgttagaggattttttttttttggtgt

upper sequence: GLYMA10G28620.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM5G800558_T01 (Zea mays), 5'ss of exon 1
TTCTCACTCATAAGGCTTCAAGCTGATTATCTCCTTGTTGTAGGAGTGTGTCTGACCCTCAGCATTGCAAATATTGTTGGTTTTACCAAATGCAAAAAAGgtcagtaagtttattgataatattcttaaaatgtatgtttcccaattcccactctcctaatatagcaaaattgttttaggttggaggaattgtctgcata----
||||| ||||| || |||||||||||||| || || ||||| ||||| ||  ||| ||||||||||||||||||| |||| || ||||||||||| ||||||  | |  ||      || |      ||    ||  ||    ||   |   |     |  | || |||       ||  || || |  || ||          
TTCTCGCTCATCAGACTTCAAGCTGATTACCTTCTCGTTGTTGGAGTTTGCTTGAGCCTCAGCATTGCAAATATTATTGGGTTCACCAAATGCAATAAAGgt--gcacattctcctgtattgcatccaatgc-taccttgttgaaaaacttatgattgatgaaagtaaagcatgcatatttttgaagc-ttatcaatcagtcat

upper sequence: GLYMA10G28620.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G048117_T01 (Zea mays), 5'ss of exon 5
TTCTCACTCATAAGGCTTCAAGCTGATTATCTCCTTGTTGTAGGAGTGTGTCTGACCCTCAGCATTGCAAATATTGTTGGTTTTACCAAATGCAAAAAAGgtcagtaagtttattgataatattctta-aaatgtatgtttcccaattcccactctcctaatatagcaaaattgttttaggttggag---gaattgtctgcata
|| |||||||| |||||| | |||||||| || |||||||| ||||| ||  |||  || ||||||||||| |||||||| || ||||| ||||| ||||||  ||    | ||||| ||  ||||    ||  | | || ||| | |     |   |  |  |        | |  ||   ||| |   ||||    || |  
TTTTCACTCATCAGGCTTGAGGCTGATTACCTTCTTGTTGTTGGAGTTTGCTTGAGTCTAAGCATTGCAAACATTGTTGGATTCACCAAGTGCAACAAAGgtacgtcg--taattgagaagtttctagtgaagatttattgccctagttattttactccgaactgattgtcctttcataaactggtgattgaatgagatgga--

upper sequence: GLYMA10G28620.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0060g00830.t01 (Vitis vinifera), 5'ss of exon 5
TTCTCACTCATAAGGCTTCAAGCTGATTATCTCCTTGTTGTAGGAGTGTGTCTGACCCTCAGCATTGCAAATATTGTTGGTTTTACCAAATGCAAAAAAGgtcagtaag---tttattgataatattcttaaaatgtatgtttcccaattcccactctcctaatatagcaaaattgttttaggttggaggaattgtctgcata--
||||| ||| ||||| |||||||||| ||||| || |||||||| || ||| | ||||||||| ||||||||||| |||| ||||||||||||   |||||| || |||   | | |||    |       || |  ||     || | ||    |  ||    | |     ||  |   |  ||   | |||  | |  ||   
TTCTCTCTCGTAAGGTTTCAAGCTGACTATCTGCTAGTTGTAGGGGTTTGTTTAACCCTCAGCCTTGCAAATATTATTGGCTTTACCAAATGCCGCAAAGgtgagcaagcagtcttttggacttggatcataattcaataccctcctaatcttgtttgcc----aaaatgtgatcttcacacatttatgtaatc-tgtaaatgtt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192314171|gb|FK011543.1|FK011543
EST:     TCTGACCCTCAGCATTGCAAATATTGTTGGTTTTACCAAATGCAAAAAAG                         ATGCCAAGAAGCAGATTCAACAATTTGCCTTTCAGACAATTGCCTCTCGGT
genomic: TCTGACCCTCAGCATTGCAAATATTGTTGGTTTTACCAAATGCAAAAAAGgtcagtaagt ... gccttttcagATGCCAAGAAGCAGATTCAACAATTTGCCTCTCAGACAATTGCCTCTCGGT
EST: gi|192322592|gb|FK014713.1|FK014713
EST:     TCTGACCCTCAGCATTGCAAATATTGTTGGTTTTACCAAATGCAAAAAAG                         ATGCCAAGAAGCAGATTCAACAATTTGCCTCTCAGACAATTGCCTCTCGGT
genomic: TCTGACCCTCAGCATTGCAAATATTGTTGGTTTTACCAAATGCAAAAAAGgtcagtaagt ... gccttttcagATGCCAAGAAGCAGATTCAACAATTTGCCTCTCAGACAATTGCCTCTCGGT
EST: gi|208210429|gb|GE014290.1|GE014290
EST:     TCTGACCCTCAGCATTGCAAATATTGTTGGTTTTACCAAATGCAAAAAAG                         ATGCCAAGAAGCAGATTCAACAATTTGCCTCTCAGACAATTGCCTCTCGGT
genomic: TCTGACCCTCAGCATTGCAAATATTGTTGGTTTTACCAAATGCAAAAAAGgtcagtaagt ... gccttttcagATGCCAAGAAGCAGATTCAACAATTTGCCTCTCAGACAATTGCCTCTCGGT
EST: gi|192333423|gb|FK023952.1|FK023952
EST:     TCTGACCCTCAGCATTGCAAATATTGTTGGTTTTACCAAATGCAAAAAAG                         ATGCCAAGAAGCAGATTCAACAATTTGCCTCTCAGACAATTGCCTCTCGGT
genomic: TCTGACCCTCAGCATTGCAAATATTGTTGGTTTTACCAAATGCAAAAAAGgtcagtaagt ... gccttttcagATGCCAAGAAGCAGATTCAACAATTTGCCTCTCAGACAATTGCCTCTCGGT
EST: gi|58025339|gb|CX712080.1|CX712080
EST:     TCTGACCCTCAGCATTGCAAATATTGTTGGTTTTACCAAATGCAAAAAAG                         ATGCCAAGAAGCAGATTCAACAATTTGCCTCTCAGACAATTGCCTCTCGGT
genomic: TCTGACCCTCAGCATTGCAAATATTGTTGGTTTTACCAAATGCAAAAAAGgtcagtaagt ... gccttttcagATGCCAAGAAGCAGATTCAACAATTTGCCTCTCAGACAATTGCCTCTCGGT
EST: gi|41145422|gb|CK605633.1|CK605633
EST:     TCTGACCCTCAGCATTGCAAATATTGTTGGTTTTACCAAATGCAAAAAAG                         ATGCCAAGAAGCAGATTCAACAATTTGCCTCTCAGACAATTGCCTCTCGGT
genomic: TCTGACCCTCAGCATTGCAAATATTGTTGGTTTTACCAAATGCAAAAAAGgtcagtaagt ... gccttttcagATGCCAAGAAGCAGATTCAACAATTTGCCTCTCAGACAATTGCCTCTCGGT
EST: gi|192326657|gb|FK017314.1|FK017314
EST:     TCTGACCCTCAGCATTGCAAATATTGTTGGTTTTACCAAATGCAAAAAAG                         ATGCCAAGAAGCAGATTCAACAATTTGCCTCTCAGACAATTGCCTCTCGGT
genomic: TCTGACCCTCAGCATTGCAAATATTGTTGGTTTTACCAAATGCAAAAAAGgtcagtaagt ... gccttttcagATGCCAAGAAGCAGATTCAACAATTTGCCTCTCAGACAATTGCCTCTCGGT