Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAACAATCAGGTCATGCTTAGATGAGTTGCCTGGCTTTCCACGAACACAAATTGGGTTTGCAACTTTTGACAGCACAATACATTTTTATAACATGAAGgtttgtagtattatagtattaccattgttaatatatgtccgtatttgccttattagttggtatactttatgctaattattctatattacacttttccag

Basic information

species Glycine max
transcript GLYMA10G28520.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G28520.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G07100.1 (Arabidopsis thaliana), 5'ss of exon 5
CCAAACAATCAGGTCATGCTTAGATGAGTTGCCTGGCTTTCCACGAACACAAATTGGGTTTGCAACTTTTGACAGCACAATACATTTTTATAACATGAAGgtttgtagtattatagtattaccattgttaatatatgtccgtatttgccttattagttggtatactttatgctaattattctatattacacttttccag
 ||||| || | ||| || || ||| |  ||||||| | |||| |||| |||||||| |||   |||| |||||||||  |||||||||| |||||||||||  | || ||| ||   | ||      |  | | | |    |||        |   |  | |  ||| ||   | |  |    | | ||         
TCAAACGATTAAGTCTTGTTTGGATAACCTGCCTGGTTATCCAAGAACTCAAATTGGATTTATTACTTATGACAGCACGTTACATTTTTACAACATGAAGgtaag-agaattgtaaactcacaggaact--tttgttttgaaattctttagcctccataattttttttttgtggact--ttggcaatgcag--------

upper sequence: GLYMA10G28520.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv19s0014g01900.t01 (Vitis vinifera), 5'ss of exon 5
CCAAACAATCAGGTCATGCTTAGATGAGTTGCCTGGCTTTCCACGAACACAAATTGGGTTTGCAACTTTTGACAGCACAATACATTTTTATAACATGAAGgtttgtagtattatagtattaccattgttaatatatgtccgtatttgccttattagttggtatactttatg--------ctaattattctata--ttacacttttccag
 ||||| || || || ||||| |||||| | ||||| |   |  ||||||| ||||| ||   ||||||||||||||| |||||||||||||| |||||||   ||  ||  ||| |  || ||    ||| || | |   |||        || | || |  |   | ||        |||| ||   |     ||   || ||||||
ACAAACTATTAGATCTTGCTTGGATGAGCTACCTGGTTCCACCAGAACACAGATTGGTTTCATAACTTTTGACAGCACCATACATTTTTATAATATGAAGgcaagtcatag-atactgctatcagctataacatgtatttatatgccatcattttgctgcttcagcctttgggggagttctaagtaacttggggttttgtctgttccag