1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCTGCGCAACTGCAATTTAGAGGACAGCGTATTTGGTCGGCAGCAATCGAAGATTTGATGTCAAAGGGAATGCGATTTGCCAGGCAGgttgtacacacatatgcacacatacattgctacttatataatctttgttctcacgttagatactactatttttgcttcag
species | Glycine max |
transcript | GLYMA10G28230.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CGGCAGCAATCGAAGATTTGATGTCAAAGGGAATGCGATTTGCCAGGCAG GCTCTTCTTTCTGGATGCTCGGCTGGTGGTTTGGCTACTATTATACACTGTEST: gi|209706963|gb|BW661522.1|BW661522
genomic: CGGCAGCAATCGAAGATTTGATGTCAAAGGGAATGCGATTTGCCAGGCAGgttgtacaca ... tttgcttcagGCTCTTCTTTCTGGATGCTCGGCTGGTGGTTTGGCTACTATTATACACTGT
EST: CGGCAGCAATCGAAGATTTGATGTCAAAGGGAATGCGATTTGCCAGGCAG GCTCTTCTTTCTGGATGCTCGGCTGGTGGTTTGGCTACTATTATACACTGTEST: gi|8284433|gb|BE021992.1|BE021992
genomic: CGGCAGCAATCGAAGATTTGATGTCAAAGGGAATGCGATTTGCCAGGCAGgttgtacaca ... tttgcttcagGCTCTTCTTTCTGGATGCTCGGCTGGTGGTTTGGCTACTATTATACACTGT
EST: CGGCAGCAATCGAAGATTTGATGTCAAAGGGAATGCGATTTG-C---CAG GCTCTTCTTTCTGGATGCTCGGCTGGTGGTTTGGCTACTATTATACACTGT
genomic: CGGCAGCAATCGAAGATTTGATGTCAAAGGGAATGCGATTTGCCAGGCAGgttgtacaca ... tttgcttcagGCTCTTCTTTCTGGATGCTCGGCTGGTGGTTTGGCTACTATTATACACTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGCGCAACTGCAATTTAGAGGACAGCGTATTTGGTCGGCAGCAATCGAAGATTTGATGTCAAAGGGAATGCGATTTGCCAGGCAGgttgtacacacatatgcacacatacattgctacttatataatctttgttctcacgttagatactactatttttgcttcag
- - - - - - - - - - - - - - - - - - - - - - - CGAAGA