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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGTCTGCCAAAACCAAAAGGTCAGACTGTTGGATCTTTCCGGAAGGGACTTACCATGTTGCCTGATGCAATTTCTGCCAGgtactacatgttgcctaataccaatgtcctagttaagtttctcctattctccagattgatgatcctagccaattgtgatcctgttaacag

Basic information

species Glycine max
transcript GLYMA10G27890.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192312907|gb|FK004049.1|FK004049
EST:     GGATCTTTCCGGAAGGGACTTACCATGTTGCCTGATGCAATTTCTGCCAG                         ACTAGGCAACAAAGTAAAGTTATCTTGGAAGCTTTCAAGTATTAGTAAACT
genomic: GGATCTTTCCGGAAGGGACTTACCATGTTGCCTGATGCAATTTCTGCCAGgtactacatg ... ctgttaacagACTAGGCAACAAAGTAAAGTTATCTTGGAAGCTTTCAAGTATTAGTAAACT
EST: gi|15338083|gb|BI498739.1|BI498739
EST:     GGATCTTTCCGGAAGGGACTTACCATGTTGCCTGATGCAATTTCTGCCAG                         ACTAGGCAACAAAGTAAAGTTATCTTGGAAGCTTTCAAGTATTAGTAAACT
genomic: GGATCTTTCCGGAAGGGACTTACCATGTTGCCTGATGCAATTTCTGCCAGgtactacatg ... ctgttaacagACTAGGCAACAAAGTAAAGTTATCTTGGAAGCTTTCAAGTATTAGTAAACT
EST: gi|8284127|gb|BE021686.1|BE021686
EST:     GTTGCCTGATGCAATTTCTGCCAG                         ACTAGGCAACAAAGTAAAGTTATCTTGGAAGCTTTCAAGTATTAGTAAACT
genomic: GTTGCCTGATGCAATTTCTGCCAGgtactacatg ... ctgttaacagACTAGGCAACAAAGTAAAGTTATCTTGGAAGCTTTCAAGTATTAGTAAACT
EST: gi|17022014|gb|BM093048.1|BM093048
EST:     GGATCTTTCCGGAAGGGACTTACCATGTTGCCTGATGCAATTTCTGCCAG                         ACTAGGCAACAAAGTAAAGTTATCTTGGAAGCTTTCAAGTATTAGTAAACT
genomic: GGATCTTTCCGGAAGGGACTTACCATGTTGCCTGATGCAATTTCTGCCAGgtactacatg ... ctgttaacagACTAGGCAACAAAGTAAAGTTATCTTGGAAGCTTTCAAGTATTAGTAAACT