Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCAAATCTATGAAGTTTAAGGATGGGTACATGATTTCTTCTGGGCAACCTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgcttctattctttgtagattcttgatactatttatctcttttgggttgttgattttactatgaagtgatgatgctaattgttattttttgctgcctcatag

Basic information

species Glycine max
transcript GLYMA10G26790.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G26790.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os07g41750.1 (Oryza sativa), 5'ss of exon 5
AGCCAAATCTATGAAGTTTAAGGATGGGTACATGATTTCTTCTGGGCAACCTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgcttctattctttgtagattcttgatactatttatctcttttgggttgttgattttactatgaagtgatgatgctaattgttattttttgctgcctcatag
 || ||||| |||||||| ||||| || |||||||||||||||||  | ||||| ||    || ||||||||||| || |||||||| || ||||||||||||| | | |  | ||  |      | |  |||  || |  || | |     || |   || | | |        || |||  || || ||||  |           
TGCTAAATCCATGAAGTTCAAGGACGGATACATGATTTCTTCTGGTTATCCTGTTAACTTGTATATTGACTCTGCTGTTAGACATGTTCTTCTGAGACAGgtttgtacataaaatccatccg---tttgaataaaatgttgctgtctccttgtgatagcttgaatttttttcttagaagctgcttcttgttttcag-----------

upper sequence: GLYMA10G26790.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G093902_T02 (Zea mays), 5'ss of exon 5
AGCCAAATCTATGAAGTTTAAGGATGGGTACATGATTTCTTCTGGGCAACCTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttt-tgcttc-tattctttgtagattcttgatactatt-tatctcttttgggttgttgattttactatgaagtgatgatgctaattgttattttttgctgcctcatag
 || || ||||||||||| |||||||||||||||||||||||||| || ||||||||    |||||||| || || ||||||||||| ||  ||||||||||||  |||||  |||    |||    |  | || | |   |||  |      | ||||  |  |||| | |  |||    |||                          
TGCTAAGTCTATGAAGTTCAAGGATGGGTACATGATTTCTTCTGGTCATCCTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAGgtttggtgcttggtatcagatgttatcttattatgcaaacatataacaaaatagctgttagtaatactct-agttgacttggcttcag----------------------

upper sequence: GLYMA10G26790.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G53870.1 (Arabidopsis thaliana), 5'ss of exon 4
AGCCAAATCTATGAAGTTTAAGGATGGGTACATGATTTCTTCTGGGCAACCTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgt---ttttgctt---ctattctttgtagattcttgatactatttatctcttttgggttgttgattttactatgaagtgatgatgctaattgttattttttgctgcctcatag
|||||| ||||||||||| || ||||| |||||| | || ||||| |||||    || || ||||| ||||||||||||||||||||  | || ||||| ||   ||| |  |    | |||||  |||| |   |  |  | | | |    |    ||     | ||  ||  ||  ||  |||                            
AGCCAAGTCTATGAAGTTCAAAGATGGCTACATGGTGTCATCTGGTCAACCAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAgtgagtttcgtctgagttgttcttattagagttaagtaaaaaatcaacaacgtctaattaa-agtgttgtta--aaccgaatatgtag-------------------------

upper sequence: GLYMA10G26790.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv11s0016g01380.t01 (Vitis vinifera), 5'ss of exon 5
AGCCAAATCTATGAAGTTTAAGGATGGGTACATGATTTCTTCTGGGCAACCTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttt---ttgcttctattctttgtagattcttgatactatttatc--tcttttgggttgttgattttact-atgaagt-gatgatgctaattgttattttttgctgcctcatag------------------------
 |||||||| |||||||||||||||||||||||||| |||||||| || || ||||| || || |||||||| || |||||||||||||| || ||||||||||   |  ||       ||  |   ||| || | || ||| |     |  |      |||   |   | ||   || | | |   | ||||  ||| | | |||  ||||                          
TGCCAAATCCATGAAGTTTAAGGATGGGTACATGATATCTTCTGGTCAGCCAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttcactcacccagttgatctgttcatgcttctttttgttaacatcctcaaccattgcggtggttcatacggttgcttaccttcattgcaattgtgtcctga-tcatgttctggattgcttgccatcaaacag

upper sequence: GLYMA10G26790.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S41_146V6.1 (Physcomitrella patens), 5'ss of exon 5
AGCCAAATCTATGAAGTTTAAGGATGGGTACATGATTTCTTCTGGGCAACCTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttttt---gcttctattctttg-tagattcttgatactatttat-ctcttttgggttgttgattttactatgaagtgatgatgctaattgttattttt---tgctgcctcatag-----------------------
|||||| ||||||||||| |||||||| ||||||||||| || ||    || ||||| |||||||| ||   ||| || ||||| ||  |  |  ||||||||| |   ||  ||||||  || |    |||   |  | |   | ||  |||    |   |  |||  | | |||  |  ||     |||  | || |   |  ||  || |||                       
AGCCAAGTCTATGAAGTTCAAGGATGGCTACATGATTTCATCAGGAAGCCCCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgagcagctattcagtggtgtcctctctgtggtctccttgctgatttctcctacggtctttgttttcaagaaaaaatctcgtttgcaagttgtctgtaatgtatcttagaaatgtttcgttatttttttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6072063|gb|AW101382.1|AW101382
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|209716016|gb|BW662267.1|BW662267
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|193552887|gb|FK505730.1|FK505730
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|15337030|gb|BI497686.1|BI497686
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|21993586|gb|BQ785114.1|BQ785114
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|192312678|gb|FK004366.1|FK004366
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|209729682|gb|BW669782.1|BW669782
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|193465642|gb|FK432869.1|FK432869
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|192312679|gb|FK004367.1|FK004367
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|8402818|gb|BE058452.1|BE058452
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|192299860|gb|FG993350.1|FG993350
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         G-TGTTCTTGGCATTA
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTA
EST: gi|151398090|gb|EV267968.1|EV267968
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|213590916|gb|DB975116.1|DB975116
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|308098397|gb|HO760138.1|HO760138
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|22927008|gb|BU544147.1|BU544147
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|208297648|gb|GE090595.1|GE090595
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|15203305|gb|BI426073.1|BI426073
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCT
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCT
EST: gi|209717542|gb|BW653956.1|BW653956
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|15337465|gb|BI498121.1|BI498121
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|6725979|gb|AW310378.1|AW310378
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|42722882|gb|CK768781.1|CK768781
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|27427516|gb|CA939036.1|CA939036
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACCTGTGCTCCTGAGACAA                         GGTGTTCTTGGCATTAA
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAA
EST: gi|8282554|gb|BE020115.1|BE020115
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGNGATCCTAANGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|209718918|gb|BW669107.1|BW669107
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|18039340|gb|BM307634.1|BM307634
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|31468836|gb|CD410864.1|CD410864
EST:     TGTCAAAGATTACATTGACTCTGCAGTGAGGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: TGTCAAAGATTACATTGACTCTGCAGTGA-GACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|208189105|gb|GD986043.1|GD986043
EST:     TTTCTAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: --TC-AAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|213588865|gb|DB984378.1|DB984378
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|21601379|gb|BQ611710.1|BQ611710
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAG
EST: gi|213593603|gb|DB977435.1|DB977435
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|12773588|gb|BG238515.1|BG238515
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGG-
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|207772666|gb|GD743916.1|GD743916
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|151406970|gb|EV276785.1|EV276785
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAAGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|192324283|gb|FK018259.1|FK018259
EST:     CTGTCAAAGATTACATTGACTCCGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGT
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAGGT
EST: gi|209707152|gb|BW656769.1|BW656769
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|7590723|gb|AW706532.1|AW706532
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|209718917|gb|BW669106.1|BW669106
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGA
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAGGTGA
EST: gi|12687952|gb|BG154227.1|BG154227
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAANGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|8283875|gb|BE021434.1|BE021434
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgctt ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCCAAATCTATGAAGTTTAAGGATGGGTACATGATTTCTTCTGGGCAACCTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgtttttgcttctattctttgtagattcttgatactatttatctcttttgggttgttgattttactatgaagtgatgatgctaattgttattttttgctgcctcatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG