1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCTGGACAACAATATTACAAAGAAACCAAATTACAGGCTTTATGTTATTAACAAGCTGAAATCCCTACGGGTGTTAGATTTCAAGAAAGTGAAAAATAAGgtaatgttcttttttccctctacccatacgtatctttaattgagcttgttgtttgaaatgaaatatgaaagatatgatgttctggtaatgtctgcattca...
species | Glycine max |
transcript | GLYMA10G24350.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACAAGCTGAAATCCCTACGGGTGTTAGATTTCAAGAAAGTGAAAAATAAG GAACGGTTGGAAGCCAAAAATTTGTTTTCTTCAAAAGAAGTTATAGAAGAAEST: gi|151403344|gb|EV273154.1|EV273154
genomic: ACAAGCTGAAATCCCTACGGGTGTTAGATTTCAAGAAAGTGAAAAATAAGgtaatgttct ... taattaatagGAACGGTTGGAAGCCAAAAATTTGTTTTCTTCAAAAGAAGTTATAGAAGAA
EST: CAAGCTGAAATCCCTACGGGTGTTAGATTTCAAGAAAGTGAAAAATAAG GAACGGTTGGAAGCCAAAAATTTGTTTTCTTCAAAAGAAGTTATAGAAGAAEST: gi|208075968|gb|GD873385.1|GD873385
genomic: CAAGCTGAAATCCCTACGGGTGTTAGATTTCAAGAAAGTGAAAAATAAGgtaatgttct ... taattaatagGAACGGTTGGAAGCCAAAAATTTGTTTTCTTCAAAAGAAGTTATAGAAGAA
EST: ACAAGCTGAAATCCCTACGGGTGTTAGATTTCAAGAAAGTGAAAAATAAG GAACGGTTGGAAGCCAAAAATTTGTTTTCTTCAAA-GAAGTTATAGEST: gi|58023144|gb|CX709885.1|CX709885
genomic: ACAAGCTGAAATCCCTACGGGTGTTAGATTTCAAGAAAGTGAAAAATAAGgtaatgttct ... taattaatagGAACGGTTGGAAGCCAAAAATTTGTTTTCTTCAAAAGAAGTTATAG
EST: ACAAGCTGAAATCCCTACGGGTGTTAGATTTCAAGAAAGTGAAAAATAAG GAACGGTTGGAAGCCAAAAATTTGTTTTCTTCAAAAGAAGTTATAGAAGAAEST: gi|23052917|gb|BU577408.1|BU577408
genomic: ACAAGCTGAAATCCCTACGGGTGTTAGATTTCAAGAAAGTGAAAAATAAGgtaatgttct ... taattaatagGAACGGTTGGAAGCCAAAAATTTGTTTTCTTCAAAAGAAGTTATAGAAGAA
EST: ACAAGCTGAAATCCCTACGGGTGTTAGATTTCAAGAAAGTGAAAAATAAG GAACGGTTGGAAGCCAAAAATTTGTTTTCTTCAAAAGAAGTTATAGAAGAAEST: gi|7691074|gb|AW759208.1|AW759208
genomic: ACAAGCTGAAATCCCTACGGGTGTTAGATTTCAAGAAAGTGAAAAATAAGgtaatgttct ... taattaatagGAACGGTTGGAAGCCAAAAATTTGTTTTCTTCAAAAGAAGTTATAGAAGAA
EST: ACAAGCTGAAATCCCTACGGGTGTTAGATTTCAAGAAAGTGAAGAATAAG GAACGGTTGGAAGCCAAAAATGTGTTGTCTTCAAAAGAAGTTATAGAAAGAEST: gi|13790409|gb|BG653000.1|BG653000
genomic: ACAAGCTGAAATCCCTACGGGTGTTAGATTTCAAGAAAGTGAAAAATAAGgtaatgttct ... taattaatagGAACGGTTGGAAGCCAAAAATTTGTTTTCTTCAAAAGAAGTTATAGAA-GA
EST: ACAAGCTGAAATCCCTACGGGTGTTAGATTTCAAGAAAGTGAAAAATAAG GAACGGTTGGAAGCCAAAAATTTGTTTTCTTCAAAAGAAGTTATAGAAGAAEST: gi|8282401|gb|BE019962.1|BE019962
genomic: ACAAGCTGAAATCCCTACGGGTGTTAGATTTCAAGAAAGTGAAAAATAAGgtaatgttct ... taattaatagGAACGGTTGGAAGCCAAAAATTTGTTTTCTTCAAAAGAAGTTATAGAAGAA
EST: ACAAGCTGAAATCCCTACGGGTGTTAGATTTCAAGAAAGTGAAAAATAAG GAACGGTTGGAAGCCAAAAATTTGTTTTCTTCAAAAGAAGTTATAGAAGAAEST: gi|192320514|gb|FK011924.1|FK011924
genomic: ACAAGCTGAAATCCCTACGGGTGTTAGATTTCAAGAAAGTGAAAAATAAGgtaatgttct ... taattaatagGAACGGTTGGAAGCCAAAAATTTGTTTTCTTCAAAAGAAGTTATAGAAGAA
EST: ACAAGCTGAAATCCCTACGGGTGTTAGATTTCAAGAAAGTGAAAAATAAG GAACGGTTGGAAGCCAAAAATTTGTTTTCTTCAAAAGAAGTTATAGAAGAAEST: gi|16106162|gb|BI893902.1|BI893902
genomic: ACAAGCTGAAATCCCTACGGGTGTTAGATTTCAAGAAAGTGAAAAATAAGgtaatgttct ... taattaatagGAACGGTTGGAAGCCAAAAATTTGTTTTCTTCAAAAGAAGTTATAGAAGAA
EST: ACAAGCTGAAATCCCTACGGGTGTTAGATTTCAAGAAAGTGAAAAATAAG GAACGGTTGGAAGCCAAAAATTTGTTTTCTTCAAAAGAAGTTATAGAAGAAEST: gi|192308052|gb|FG999035.1|FG999035
genomic: ACAAGCTGAAATCCCTACGGGTGTTAGATTTCAAGAAAGTGAAAAATAAGgtaatgttct ... taattaatagGAACGGTTGGAAGCCAAAAATTTGTTTTCTTCAAAAGAAGTTATAGAAGAA
EST: ACAAGCTGAAATCCCTACGGGTGTTAGATTTCAAGAAAGTGAAAA-TAAG GAACGGTTGGAAGCCAAAAATTTGTTTTCTTCAAA-GAAGTTATAGAAGAAEST: gi|213595893|gb|DB966252.1|DB966252
genomic: ACAAGCTGAAATCCCTACGGGTGTTAGATTTCAAGAAAGTGAAAAATAAGgtaatgttct ... taattaatagGAACGGTTGGAAGCCAAAAATTTGTTTTCTTCAAAAGAAGTTATAGAAGAA
EST: ACAAGCTGAAATCCCTACGGGTGTTAGATTTCAAGAAAGTGAAAAATAAG GAACGGTTGGAAGCCAAAAATTTGTTTTCTTCAAAEST: gi|214008290|gb|DB989832.1|DB989832
genomic: ACAAGCTGAAATCCCTACGGGTGTTAGATTTCAAGAAAGTGAAAAATAAGgtaatgttct ... taattaatagGAACGGTTGGAAGCCAAAAATTTGTTTTCTTCAAA
EST: TAGATTTCAAGAAAGTGAAAACTAAG GAACGGTTGGAAGCCAAAAATTTGTTTTCTTCAAAAGAAGTTATAGAAGAAEST: gi|16344759|gb|BI970354.1|BI970354
genomic: TAGATTTCAAGAAAGTGAAAAATAAGgtaatgttct ... taattaatagGAACGGTTGGAAGCCAAAAATTTGTTTTCTTCAAAAGAAGTTATAGAAGAA
EST: ACAAGCTGAAATCCCTACGGGTGTTAGATTTCAAGNNNNTGAAAAATAAG GAACGGTTGGAAGCCAAAAATTTGNNNTCTTCAAAAGAAGTTATAGAAGAA
genomic: ACAAGCTGAAATCCCTACGGGTGTTAGATTTCAAGAAAGTGAAAAATAAGgtaatgttct ... taattaatagGAACGGTTGGAAGCCAAAAATTTGTTTTCTTCAAAAGAAGTTATAGAAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGGACAACAATATTACAAAGAAACCAAATTACAGGCTTTATGTTATTAACAAGCTGAAATCCCTACGGGTGTTAGATTTCAAGAAAGTGAAAAATAAGgtaatgttcttttttccctctacccatacgtatctttaattgagcttgttgtttgaaatgaaatatgaaagatatgatgttctggtaatgtctgcattca
- - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgaaa