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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACGGGCCATATACATAAACATTCAAAAATTTGTGCAGTTTCAGTTAACAGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgtttgttgattcataaaaattttgtttccactgcagtgttgttgaatctgtttcaatgaacagccgattaagttttcttccttattttcag

Basic information

species Glycine max
transcript GLYMA10G15800.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G15800.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os11g04460.1 (Oryza sativa), 5'ss of exon 5
GGACGGGCCATATACATAAACATTCAAAAATTTGTGCAGTTTCAGTTAACAGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgttt--gttgattcataaaaat--tttgtttccactgcagtgttgttgaatctgtttcaatga------acagccgattaa-gttttcttccttattttcag
|| || ||  | || || ||||| ||||| |||||||||||||| || || ||||||||||||||| |  |||| || ||||| || |||||||||||||||    |     | |||  | |  | || | ||| || | |    || | |   |  | ||||      |||    | ||| ||||   || |   |  |||
GGTCGTGCAGTTTATATTAACATCCAAAAGTTTGTGCAGTTTCAATTGACTGTCAATATTGTTGCTTTAGTTATCAATTTTGTCTCAGCATGCATCACAGgtgagggcaacattatagtattcatctgatacca-tgtatttccattaagtggttccccatgatctccaacacagtactaatgtttctctcttccgtcacag

upper sequence: GLYMA10G15800.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os12g04220.1 (Oryza sativa), 5'ss of exon 5
GGACGGGCCATATACATAAACATTCAAAAATTTGTGCAGTTTCAGTTAACAGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgtttgttgattcataaaaattttgtttc---cactgcagtgttgttgaatctgtttcaatgaac----agccgat--taa-gttttcttccttattttcag
|| || ||  | || || ||||| ||||| ||||||||||||||||| || ||||||||||||||| |  | || || ||||| || |||||||||| ||||  |   |    || |   ||  | |    |  || | |    || | |   | || |||| |    || |  |  ||| |||||  || |   |  |||
GGTCGTGCAGTTTATATTAACATCCAAAAGTTTGTGCAGTTTCAGTTGACTGTCAATATTGTTGCTTTAGTCATCAATTTTGTCTCAGCATGCATCATAGgtgagggcaacattatagtattcatctgatgctatgtatttccattaagtggttctccatgatctccaagacagtactaatgttttgctcttccgtcacag

upper sequence: GLYMA10G15800.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os05g41580.1 (Oryza sativa), 5'ss of exon 5
GGACGGGCCATATACATAAACATTCAAAAATTTGTGCAGTTTCAGTTAACAGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGg--tttgttgattcataaaaattttgtttccactgcagtgttgttgaatctgtttcaatgaacagccgattaagttttcttccttattttcag-----------
|| || ||  | ||| ||||||| || || ||||||||||| ||| | ||||| |||||||| ||||||||| | || ||||| || || ||||||| |||  || |   | |    |  | | |  |   | ||   |  || |||  |||||| ||   |  |   |||  |||||||    ||  |||             
GGCCGTGCAGTTTACTTAAACATCCAGAAGTTTGTGCAGTTCCAGCTTACAGTTAATATTGTGGCTCTGATTGTGAATTTTGTCTCAGCGTGCATCATAGgtattagcacacttgctaccactctaatattattgatctaatgatga--ctgtttgaaatgaatgtgtatt--gttttctagaataaattcgtatgcattttat

upper sequence: GLYMA10G15800.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G104730_T02 (Zea mays), 5'ss of exon 6
GGACGGGCCATATACATAAACATTCAAAAATTTGTGCAGTTTCAGTTAACAGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgtttgttgattcataaaaattttgtttccactgcagtgttgttgaatctgtttcaatgaacagccgattaagttttcttcct-tattttcag---------------------------------------------------------
|| || ||  | ||||||||||| || || || |||||||||||| | || ||||| ||||| |||||| | || |||||||| || |||||||| |||||||||  |     ||   ||    || |   |||| | |  | |    ||   || ||      |  |||    |||||  | ||| | | |                                                         
GGCCGCGCGGTCTACATAAACATCCAGAAGTTCGTGCAGTTTCAGCTGACCGTCAACATTGTGGCTCTGGTCATCAACTTTGTCTCGGCATGCATTACAGgtttggggccatttacctatgacattcctcttgcaatataat-ggccatgggcca-tggctgttcagttagtggttcttggtatatctgctgctatgccatctggagtaacagtgctttgagtgctgtactactgtactgctacgacag

upper sequence: GLYMA10G15800.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G357620_T01 (Zea mays), 5'ss of exon 5
GGACGGGCCATATACATAAACATTCAAAAATTTGTGCAGTTTCAGTTAACAGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgtttgt------tgattcataaaaat----tttgtttccactgc-agtgttgttgaatctgtttcaatgaacagc-cgattaagttttcttccttattttcag
|| || ||  | ||||||||||| ||||| || |||||||| ||| | || ||||| ||||||||| || | || ||||| || || |||||||| ||||||  |       | ||   ||  | |      | | |||| ||| ||| |||        |||| |   || | | |  ||  |   | |   ||   ||   
GGTCGTGCGGTTTACATAAACATCCAAAAGTTCGTGCAGTTCCAGCTGACTGTCAACATTGTTGCTTTGGTCATCAACTTCGTCTCAGCATGCATTACAGgtgcgcgcatcatcatctgtagtagtgtttcctttctccaatgccagtattgccatggtcgttttacccaaaaacactgttctgcactgtagattgcatt---

upper sequence: GLYMA10G15800.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G41560.1 (Arabidopsis thaliana), 5'ss of exon 5
GGACGGGCCATATACATAAACATTCAAAAATTTGTGCAGTTTCAGTTAACAGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgtttgttgattcataaaaattttgtttccactg-cagtgttgttgaatctgtttcaatgaacagccgattaagttttcttccttattttcag
||||| ||  |||| ||||||||||| || ||||| ||||| ||| |||| || ||| | ||||||||||| || |||||||| ||||| ||||||||||||  |      || |||||         |||   |  | || | |  | || |  |||  |    | |||   |||  || |||  || |||
GGACGTGCTGTATATATAAACATTCAGAAGTTTGTTCAGTTCCAGCTAACTGTTAATGTGGTTGCTCTGATCATCAACTTTGTCTCTGCTTGCATCACAGgtacga-----cagaaaaaccaatcaaacaccatctttcttctagcgtttggtcaaatatagtaaccatttcttttggtttctt--ttccag

upper sequence: GLYMA10G15800.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G57330.1 (Arabidopsis thaliana), 5'ss of exon 5
GGACGGGCCATATACATAAACATTCAAAAATTTGTGCAGTTTCAGTTAACAGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgtttgttgattcataaaaattttgtttccactgcagtg-ttgttgaat--ctgtttcaatgaacagccgattaagttttcttccttattttcag
||||| ||  | || || ||||| || || ||||| ||||| ||| |||| || ||| ||||||||||||| || |||||||| ||||| |||||||| |||  ||  | ||| | | ||      |   |  || || || ||||||  | |||||| | |      ||||  |||||   |||   ||||||
GGACGTGCTGTGTATATCAACATCCAGAAGTTTGTTCAGTTCCAGCTAACTGTTAATGTTGTTGCTCTGATCATCAACTTTGTCTCTGCTTGCATCACTGgtaagtaaaatcaaacacatgcacaattttcaccaatgatttttgaataacagtttcagtaa-----tgatt--gttttgcacct---tttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208218896|gb|GE019238.1|GE019238
EST:     AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAG                         GATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACTTGATTATGG
genomic: AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgtttgttgat ... ttattttcagGATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACTTGATTATGG