1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTGAGAAGAACTCGGATCAGTGAAAGAATGAGAAAATTACAAGAGCTTGTCCCAAACATGGACAAGgtaagacacataaaagcacgtttgattgtggaatatgtaaattatatgtcacatgcgatgtagttgtattggaaatttaacattcttgatgctctttgcag
species | Glycine max |
transcript | GLYMA10G12150.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCAGTGAAAGAATGAGAAAATTACAAGAGCTTGTCCCAAACATGGACAAG CAAACCAACACAGCAGACATGTTGGACTTGGCTGTTGAATACATTAAAGATEST: gi|22932208|gb|BU549347.1|BU549347
genomic: TCAGTGAAAGAATGAGAAAATTACAAGAGCTTGTCCCAAACATGGACAAGgtaagacaca ... ctctttgcagCAAACCAACACAGCAGACATGTTGGACTTGGCTGTTGAATACATTAAAGAT
EST: TCAGTGAAAGAATGAGAAAATTACAAGAGCTTGTCCCAAACATGGACAAG CAAACCAACACAGCAGACATGTTGGACTTGGCTGTTGAATACATTAAAGATEST: gi|58015020|gb|CX701762.1|CX701762
genomic: TCAGTGAAAGAATGAGAAAATTACAAGAGCTTGTCCCAAACATGGACAAGgtaagacaca ... ctctttgcagCAAACCAACACAGCAGACATGTTGGACTTGGCTGTTGAATACATTAAAGAT
EST: TCAGTGAAAGAATGAGAAAATTACAAGAGCTTGTCCCAAACATGGACAAG CAAACCAACACAGCAGACATGTTGGACTTGGCTGTTGAATACATTAAAGATEST: gi|58015327|gb|CX702069.1|CX702069
genomic: TCAGTGAAAGAATGAGAAAATTACAAGAGCTTGTCCCAAACATGGACAAGgtaagacaca ... ctctttgcagCAAACCAACACAGCAGACATGTTGGACTTGGCTGTTGAATACATTAAAGAT
EST: TCAGTGAAAGAATGAGAAAATTACAAGAGCTTGTCCCAAACATGGACAAG CAAACCAACACAGCAGACATGTTGGACTTGGCTGTTGAATACATTAAAGAT
genomic: TCAGTGAAAGAATGAGAAAATTACAAGAGCTTGTCCCAAACATGGACAAGgtaagacaca ... ctctttgcagCAAACCAACACAGCAGACATGTTGGACTTGGCTGTTGAATACATTAAAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAGAAGAACTCGGATCAGTGAAAGAATGAGAAAATTACAAGAGCTTGTCCCAAACATGGACAAGgtaagacacataaaagcacgtttgattgtggaatatgtaaattatatgtcacatgcgatgtagttgtattggaaatttaacattcttgatgctctttgcag
- - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA