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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGCTTCCAGACTATCATCACCATGTGAAGACATATGATAATACACTTATCACAAAATTTTTTGGTCTGCACAGGATTATACCTTCGAGTGGTCAAAAGgtaatgtgcatttttctgcacccgagtcattttctggagcatttatctattactattgcctcaacttgcaccttaaaacttgaaattccggaatatcaaa...

Basic information

species Glycine max
transcript GLYMA10G06800.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G06800.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G09920.1 (Arabidopsis thaliana), 5'ss of exon 4
AATGCTTCCAGACTATCATCACCATGTGAAGACATATGATAATACACTTATCACAAAATTTTTTGGTCTGCACAGGATTATACCTTCGAGTGGTCAAAAGgtaatgtgc----atttttctgcacccgagtc---attttctggagcatttatctattactattgcctcaacttgcaccttaaaacttgaaattccggaata-tcaaa-------------------------------------------------------------------------
 ||||||||||| || ||||| ||||||||||||||||| || || || || || ||||| ||||| || ||||| || | ||| || ||||||||||||||  ||  |    ||   ||   |  |   |    ||||| |       ||| || ||    |||||   | |    |||  |||  |||  |   | |  | || ||                                                                         
GATGCTTCCAGATTACCATCATCATGTGAAGACATATGAGAACACCCTCATTACTAAATTCTTTGGCCTTCACAGAATCAAACCATCAAGTGGTCAAAAGgtcctgaaccaaaatacctcaagattctgattttgattttttattatcattagct-ttgaagttgccgacattgctgcctctaaatatgatgtagagtagaactctaacattagagcaacatttggaaatccaaatcaatcttaaaactaactatgtttgaaaatttctcttccattgcag

upper sequence: GLYMA10G06800.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv08s0007g04700.t01 (Vitis vinifera), 5'ss of exon 4
AATGCTTCCAGACTATCATCACCATGTGAAGACATATGATAATACACTTATCACAAAATTTTTTGGTCTGCACAGGATTATACCTTCGAGTGGTCAAAAGgtaatgtgcatttttctgcacccgagtcattttctggagcatttatctattactattgcctca-acttgcaccttaaaacttgaaatt-ccggaatatcaaa-
|||||||||| |||||||||| ||||||  | |  |||| || ||||| || ||||||||||||||||| |||||||| | |||||| ||||| |||||||||||   ||  ||  || |         | |  |   ||| || | | | | | | |  | |  | |    ||  |   || || || |   ||| ||  | 
AATGCTTCCAAACTATCATCATCATGTGCGGTCCCATGAGAACACACTCATAACAAAATTTTTTGGTCTTCACAGGATCAAACCTTCAAGTGGGCAAAAGgtaat---caaattaatgaattaattatttctaatattgcagttctttttcaatctagaatgatgcctagttctggatctttaaagttactaaaatttcggaa

upper sequence: GLYMA10G06800.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S311_23V6.1 (Physcomitrella patens), 5'ss of exon 5
AATGCTTCCAGACTATCATCACCATGTGAAGACATATGATAATACACTTATCACAAAATTTTTTGGTCTGCACAGGATTATACCTTCGAGTGGTCAAAAGgtaatgtgcatttttctgcacccgagtcattttctggagcatttatctattactattgcctcaacttgcaccttaaaacttgaaattccggaatatcaaa----
 |||||  |||  || |||| ||||||||| || || ||||||||||| |||||||| ||||||||||| ||  | ||||  || |   | ||||||||||| || | | |||||   | |  |    | |||    |     | |    | || |    || | ||  |   | || ||||   ||  | |  || | |    
TATGCTCGCAGCATACCATCTCCATGTGAAAACTTACGATAATACACTCATCACAAAGTTTTTTGGTCTTCATCGCATTAAGCCATACGGAGGTCAAAAGgtgat-ttccttttttgacgcatgcactactttacacattcaattttagattctttcttgtctatttaaattgtcaa-cttg--cttttgtatgattatattag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19934888|gb|BQ079927.1|BQ079927
EST:     TCACAAAATTTTTTGGTCTGCACAGGATTATTCCTTCAAGTGGTCAAAAG                         TTTCGCTTTGTCGTAATGGGAAATATGTTCTGCACAGAATTAAGGATCCAT
genomic: TCACAAAATTTTTTGGTCTGCACAGGATTATACCTTCGAGTGGTCAAAAGgtaatgtgca ... tattttgcagTTTCGCTTTGTCGTGATGGGAAATATGTTCTGCACAGAATTAAGGATCCAT
EST: gi|15204779|gb|BI427547.1|BI427547
EST:     TCACAAAATTTTTTGTTCTGCACAGGATTATACCTTCGAGTGGTCAAAAG                         TTTCGCTTTGTCGTGATGGGAAATATGTTCTGCACAGAATTAAGGATCCAT
genomic: TCACAAAATTTTTTGGTCTGCACAGGATTATACCTTCGAGTGGTCAAAAGgtaatgtgca ... tattttgcagTTTCGCTTTGTCGTGATGGGAAATATGTTCTGCACAGAATTAAGGATCCAT