Sequence
atgc intronic sequence ATGC exonic sequenceGAATTTCAATGTTGGTGCTACGGTTGATTTGGATGTCCCACGTAGCTTTTGGAATCGCTTGGCTGGGAAGTATGGGAACATTTTCTATTGGAAAGAAAAGgtagtctcttgcttctcagtgtagctatttttaattagcctagttaacggtttaacttaacaccaaatgatacag
Basic information
species | Glycine max |
transcript | GLYMA10G06430.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G06430.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G022876_T02 (Zea mays), 5'ss of exon 4
GAATTTCAATGTTGGTGCTACGGTTGATTTGGATGTCCCACGTAGCTTTTGGAATCGCTTGGCTGGGAAGTATGGGAACATTTTCTATTGGAAAGAAAAGgtagtctcttgcttctcagtgtagctatttttaattagcctagttaacgg-tttaacttaa--caccaaatgatacag------------------------
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-----------------------TTGATTTAGACGTCCCTCGGAGCTTTTGGAGTCAGGTTTCAGGGAAGTATGGGAACATGTTCTACTGGAAAGAAAAGgtaacattttattgtttgacctattagaacatcttcaag--agtttccaaatttagtccaaatcattgagttttccaagttgccagaaacaattgggaacaa
upper sequence: GLYMA10G06430.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G022876_T01 (Zea mays), 5'ss of exon 5
GAATTTCAATGTTGGTGCTACGGTTGATTTGGATGTCCCACGTAGCTTTTGGAATCGCTTGGCTGGGAAGTATGGGAACATTTTCTATTGGAAAGAAAAGgtagtctcttgcttctcagtgtagctatttttaattagcctagttaacgg-tttaacttaa--caccaaatgatacag------------------------
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AAATTTTAACATTGGTCCATTAGTTGATTTAGACGTCCCTCGGAGCTTTTGGAGTCAGGTTTCAGGGAAGTATGGGAACATGTTCTACTGGAAAGAAAAGgtaacattttattgtttgacctattagaacatcttcaag--agtttccaaatttagtccaaatcattgagttttccaagttgccagaaacaattgggaacaa
upper sequence: GLYMA10G06430.2 (Glycine max), 5'ss of exon 5
lower sequence: AT5G52970.1 (Arabidopsis thaliana), 5'ss of exon 5
GAATTTCAATGTTGGTGCTACGGTTGATTTGGATGTCCCACGTAGCTTTTGGAATCGCTTGGCTGGGAAGTATGGGAACATTTTCTATTGGAAAGAAAAGgtag------tctcttgcttctcagtgtagctatttttaattagcctagttaacggtttaa----cttaacaccaaatgatacag-----------
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GAATTTCAATGTTGGAGCTACGGTTGATTTAGACATACCTCGTAGTTTCTGGAGTCGACTGGCTGGGAAATACGGCAATATGTTTTACTGGAAAGAGAAGgcaagaaagctacctcgattaaaaaaaccgatgatcgccactttctttgttttttgtttgcatgtctaaactgtttacaatatggcttgaaaccag
upper sequence: GLYMA10G06430.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv08s0040g01400.t01 (Vitis vinifera), 5'ss of exon 5
GAATTTCAATGTTGGTGCTACGGTTGATTTGGATGTCCCACGTAGCTTTTGGAATCGCTTGGCTGGGAAGTATGGGAACATTTTCTATTGGAAAGAAAAGgtagtctc------ttgcttc--tcagtgtagct-atttttaattagcctagttaacggtttaacttaacacca-aatgatacag-----------------
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CAATTTCAATGTGGGGGCTTCAGTTGATTTAGACATTCCACGTAGTTTCTGGAGCCGTTTGGCTGGGAAGTATGGAAACATATTTTACTGGAAAGAGAAGgtgaactcaccctgttgcttggatcaatgtatcttacttgtaagt--cgttgcttatggttttattagaaagtacagttatattatcaaatggctgaaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151402284|gb|EV272097.1|EV272097EST: GGAATCGCTTGGCTGGGAAGTATGGGAACATTTTCTATTGGAAAGAAA-G GGGGAAGATGCATCTATTGAAGCAGCAGTTATGGCAATTTCTAGTTGCTTG
genomic: GGAATCGCTTGGCTGGGAAGTATGGGAACATTTTCTATTGGAAAGAAAAGgtagtctctt ... aatgatacagGGGGAAGATGCATCTATTGAAGCAGCAGTTATGGCAATTTCTAGTTGCTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAATTTCAATGTTGGTGCTACGGTTGATTTGGATGTCCCACGTAGCTTTTGGAATCGCTTGGCTGGGAAGTATGGGAACATTTTCTATTGGAAAGAAAAGgtagtctcttgcttctcagtgtagctatttttaattagcctagttaacggtttaacttaacaccaaatgatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA