Sequence
atgc intronic sequence ATGC exonic sequenceCAGCGTACAATCAAAAGAACAAGTTGAAGCCAAGTTACTGAGCAAGTATGAAGCTTCTATGAGAAGAGAAAGAGCAATGGCTTATTCATTCTCTCATCAGgttttttttatttctcttatgaatttacatttgttaggataaggatagtgaaacaaacaaatgaaaaaaataaatgaaagcaaattgttggtgaacttga...
Basic information
species | Glycine max |
transcript | GLYMA10G05720.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G05720.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G03040.3 (Arabidopsis thaliana), 5'ss of exon 5
CAGCGTACAATCAAAAGAACAAGTTGAAGCCAAGTTACTGAGCAAGTATGAAGCTTCTATGAGAAGAGAAAGAGCAATGGCTTATTCATTCTCTCATCAGgttttttttatttctcttatgaatttacatttgttaggataaggatagtgaaacaaacaaatgaaaaaaataaatgaaagcaaattgttggtgaacttga----------------------------------
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TAGCATTCAATCAAAGGAGAAAGTTGAAGCGAATTTGCTAAGCAAGTACGAGGCAACAATGAGAAGGGAAAGGGCATTGGCTTATTCATACTCTCATCAGgtactccagtcgttacctataatgctgaatgtgt--ggaaagatacaattaaa-----aagtgaacacatccattgaagttgaatctgtggttcatttgaatgttgtaatgatcctatatgttcatgtttgcag
upper sequence: GLYMA10G05720.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv08s0040g02360.t01 (Vitis vinifera), 5'ss of exon 5
CAGCGTACAATCAAAAGAACAAGTTGAAGCCAAGTTACTGAGCAAGTATGAAGCTTCTATGAGAAGAGAAAGAGCAATGGCTTATTCATTCTCTCATCAGgtttttt--ttatt-------tctcttatgaatttacatttgttaggataagga------tagtgaaacaaacaaatga---------aaaaaataaatgaaagcaaat--tgttggtgaacttga-------------------------------------------------------------
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CAGCCTACAATCAAAAGAACAAATTGAAGCAGGCCTATTAAACAAGCAAGGGGCAGCAATGAGAAGAGAAAGGGCACTGGCTTATGCATTTTCTCATCAGgtatcctattcatcaatactgtttcctgcccattatccatttttaggatcaagaactcactggttggatcttccagttatcttggtatgaaatggaaagaaaatcaaataccagtggtgcactcatgtagacacatgttttattattgcaaattcttgattaatccctgatggaattggtcctacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193419933|gb|FK385371.1|FK385371EST: AAGCTTCTATGAGAAGAGAAAGAGCAATGGCTTATTCATTCTCTCATCAG CATAACTGGAAGAATGCATCAAGATCTATAAACCCAATGTTCATGGATCCA
genomic: AAGCTTCTATGAGAAGAGAAAGAGCAATGGCTTATTCATTCTCTCATCAGgtttttttta ... atcttgacagCATAACTGGAAGAATGCATCAAGATCTATAAACCCAATGTTCATGGATCCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAGCGTACAATCAAAAGAACAAGTTGAAGCCAAGTTACTGAGCAAGTATGAAGCTTCTATGAGAAGAGAAAGAGCAATGGCTTATTCATTCTCTCATCAGgttttttttatttctcttatgaatttacatttgttaggataaggatagtgaaacaaacaaatgaaaaaaataaatgaaagcaaattgttggtgaacttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA