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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGAGAAAGGATATCTTGACTGAAGATGAAGCCAGATTTTATGTAGGAGAAACAGTTTTAGCTATTGAATCTATACATAAGCACAATTATATACATAGgtatgcatatacttgttcatttactttcggagtagtcctatttccttagttgtaccacatttaacttttctatttagggttagcttctaatttgtcctgg...

Basic information

species Glycine max
transcript GLYMA10G04410.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G04410.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0005g03690.t01 (Vitis vinifera), 5'ss of exon 4
TTATGAGAAAGGATATCTTGACTGAAGATGAAGCCAGATTTTATGTAGGAGAAACAGTTTTAGCTATTGAATCTATACATAAGCACAATTATATACATAGgtatgcat---atacttgttcatttactttcggagtagtcctatttccttagttgtaccacatttaacttttctatttag--ggttagcttctaatttgtcctgg--------------
| ||||||||||||| ||||||||||||||| || ||||||||||| |||||||||||||| |||||||||||||| || || || ||||| || ||||||| || |    |   || ||| |||    |    |||        |  ||        |   | | | |  |  |   |   | |||  || |  | | |||                 
TCATGAGAAAGGATACCTTGACTGAAGATGAGGCTAGATTTTATGTTGGAGAAACAGTTTTGGCTATTGAATCTATTCACAAACATAATTACATTCATAGgtttgtaggggacctttattctttttggctatatgtaacttggcatgattctagaggtcgtttcttattgatacaccaaaatgattaattttt--tctatcccaaattgcatgttgcag

upper sequence: GLYMA10G04410.2 (Glycine max), 5'ss of exon 5
lower sequence: PP1S87_129V6.1 (Physcomitrella patens), 5'ss of exon 4
TTATGAGAAAGGATATCTTGACTGAAGATGAAGCCAGATTTTATGTAGGAGAAACAGTTTTAGCTATTGAATCTATACATAAGCACAATTATATACATAGgtatgcatatacttgttcatttactttcggagtagtcctattt----ccttagttgtaccacatttaactt--ttctatttagggttagcttctaatttgtcctgg
| ||| | ||||| |  ||| ||||||||||||| ||||| ||||| ||  |    ||||| |||||||| || || || |||||||||||||||||||||||     | |  ||| |  ||| | || || |     ||| |     || |  | |    |       |   | ||  ||  ||| ||||  |   ||       
TCATGCGGAAGGACACATTGTCTGAAGATGAAGCTAGATTCTATGTTGGGCAGTGTGTTTTGGCTATTGAGTCAATCCACAAGCACAATTATATACATAGgtaattccaaa--tgtcctattaatctctgactgtgtttatgtgggatctcaaatttttagctgcaggttaaatgctgcttgcggtcagctgattgcttcct----