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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTGAGCATGAGTAGATTGGGTGGAGCTGGTGCAGTGGCACCACTGGTAACTGATATCCCATTATCGTCAGTCGAGgtaattactctacctaatgtatagttggcacaaatttgtttctctccaatttatcaaatttagtatctatctattcag

Basic information

species Glycine max
transcript GLYMA10G03690.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G03690.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0141g00220.t01 (Vitis vinifera), 5'ss of exon 5
GTTTTGAGCATGAGTAGATTGGGTGGAGCTGGTGCAGTGGCACCACTGGTAACTGATATCCCATTATCGTCAGTCGAGgtaattactctacctaatgtatagttggcacaaatttgtttctctccaatttatcaaatttag-tatctatctattcag-------------
|| |||||||||||||||||||| |||||||||||||| |||||||| ||||| || || |||||| | |||||||||||||| |        ||  ||||          ||||  ||||| |||  |  | || | ||| | ||| ||| ||                
GTCTTGAGCATGAGTAGATTGGGCGGAGCTGGTGCAGTTGCACCACTTGTAACAGACATTCCATTAGCATCAGTCGAGgtaatcaacaacaagaagatatataaacttgccatttaattctccccatgtctttaattgtaggtttctttcttttttctgctttttttaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192321148|gb|FK013580.1|FK013580
EST:     CTGGTGCAGTGGCACCACTGGTAACTGATATCCCATTATCGTCAGTCGAG                         GAAGAAGGCGGTGAGGGAAGAAACCAGCCAGCCTGGGAGAAGTGGTCAAAT
genomic: CTGGTGCAGTGGCACCACTGGTAACTGATATCCCATTATCGTCAGTCGAGgtaattactc ... atctattcagGAAGAAGGCGGTGAGGGAAGAAACCAGCCAGCCTGGGAGAAGTGGTCAAAT
EST: gi|192322439|gb|FK014920.1|FK014920
EST:     CTGGTGCAGTGGCACCACTGGTAACTGATATCCCATTATCGTCAGTCGAG                         GAAGAAGGCGGTGAGGGAAGAAACCAGCCAGCCTGGGAGAAGTGGTCAAAT
genomic: CTGGTGCAGTGGCACCACTGGTAACTGATATCCCATTATCGTCAGTCGAGgtaattactc ... atctattcagGAAGAAGGCGGTGAGGGAAGAAACCAGCCAGCCTGGGAGAAGTGGTCAAAT
EST: gi|192321147|gb|FK013579.1|FK013579
EST:     TCGTCAGTCGAG                         GAAGAAGGCGGTGAGGGAAGAAACCAGCCAGCCTGGGAGAAGTGGTCAAAT
genomic: TCGTCAGTCGAGgtaattactc ... atctattcagGAAGAAGGCGGTGAGGGAAGAAACCAGCCAGCCTGGGAGAAGTGGTCAAAT
EST: gi|21601666|gb|BQ611997.1|BQ611997
EST:     CTGGTGCAGTGGCACCACTGGTAACTGATATCCCATTATCGTCAGTCGAG                         GAAGAAGGCGGTGAGGGAAGAAACCAGCCAGCCTGGGAGAAGTGGTCAAAT
genomic: CTGGTGCAGTGGCACCACTGGTAACTGATATCCCATTATCGTCAGTCGAGgtaattactc ... atctattcagGAAGAAGGCGGTGAGGGAAGAAACCAGCCAGCCTGGGAGAAGTGGTCAAAT