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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAGTTTCTAACATGCCGCAGGCTGATCCTCAACATCCCTCATTATTTGGAGCCTTGCCAATGGGTTATGTTCCTCCATATAATGGATATGGTTATCAGgttagttctgctataatgcattattagaataataacattttcccccttaattcagggaacttttcttctgtacaatcatgtcgtcctatgagaaattattacatttatggattaatgtctgttatttttcctgcctaacatcttgatggaggtatatgtttgaataatcattttttctcaatag

Basic information

species Glycine max
transcript GLYMA10G02700.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G02700.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G03110.1 (Arabidopsis thaliana), 5'ss of exon 6
CCAAGTTTCTAACATGCCGCAGGCTGATCCTCAACATCCCTCATTATTTGGAGCCTTGCCAATGGGTTATGTTCCTCCATATAATGGATATGGTTATCAGgttagttctgctataatgcattattagaataataacattttcccccttaattcagggaacttttcttctgtacaatcatgtcgtcctatgagaaattattacatttatggattaatgtctgttatttttcctgcctaacatcttgatggaggtatatgtttgaataatcattttttctcaatag
 ||  |  |     |   | | | ||||||   | |||||||||| |||||||| || || ||||||||||| || ||||||||||||||||||||||| || ||     | | || || |         ||||     ||    |    |  |    | || |||| | | ||||| |||       | | ||| | || | |||     |  ||                                                                    
TCACATCGCCCGACTAGGGAACGGTGATCCAACAAATCCCTCATTGTTTGGAGCATTACCTATGGGTTATGTACCACCATATAATGGATATGGTTATCATgtaag-----caagaaagcct---------aatactccgttagttcaagctgtataagatttgtctt-tat-caatcttgtaac----taataaaat-tttcgtttccatttccatag------------------------------------------------------------------

upper sequence: GLYMA10G02700.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G03110.2 (Arabidopsis thaliana), 5'ss of exon 6
CCAAGTTTCTAACATGCCGCAGGCTGATCCTCAACATCCCTCATTATTTGGAGCCTTGCCAATGGGTTATGTTCCTCCATATAATGGATATGGTTATCAGgttagttctgctataatgcattattagaataataacattttcccccttaattcagggaacttttcttctgtacaatcatgtcgtcctatgagaaattattacatttatggattaatgtctgttatttttcctgcctaacatcttgatggaggtatatgtttgaataatcattttttctcaatag
 ||  |  |     |   | | | ||||||   | |||||||||| |||||||| || || ||||||||||| || ||||||||||||||||||||||| || ||     | | || || |         ||||     ||    |    |  |    | || |||| | | ||||| |||       | | ||| | || | |||     |  ||  | |                                                               
TCACATCGCCCGACTAGGGAACGGTGATCCAACAAATCCCTCATTGTTTGGAGCATTACCTATGGGTTATGTACCACCATATAATGGATATGGTTATCATgtaag-----caagaaagcct---------aatactccgttagttcaagctgtataagatttgtctt-tat-caatcttgtaac----taataaaat-tttcgtttccatttccatagcag---------------------------------------------------------------

upper sequence: GLYMA10G02700.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G03457.2 (Arabidopsis thaliana), 5'ss of exon 6
CCAAGTTTCTAACATGCCGC-AGGCT-GATCCTCAACATCCCTCATTATTTGGAGCCTTGCCAATGGGTTATGTTCCTCCATATAATGGATATGGTTATCAGgttagttctgctataatgcattattagaataataacattttcccccttaattcagggaacttttcttctgtacaatcatgtcgtcctatgagaaattattacatttatggattaatgtctgttatttttcctgcctaacatcttgatggaggtatatgtttgaataatcattttttctcaatag
  |  |   |  |||| | | || || ||||| ||| | |||||  | |||||||| || || ||| ||||||||||||| || ||||||||||| ||||| || ||||||  | |  |    || | | ||   |   |||   | | | |     | ||    |    |  | | |  |||  |    |   ||      || ||| |   || ||   |   | |||||     |||||                                            
--AGTTCAATCTCATGTCTCCAGACTCGATCCGCAAAACCCCTCCATGTTTGGAGCATTACCTATGAGTTATGTTCCTCCTTACAATGGATATGGCTATCATgtaagttcttgttttctcatctacttggattgaactttttggactcatgaggtttgaaaaagctg---tagagattggtgtattttggttgcaag-----actttttttatttgatccttaaaacttttctc-tataacag-------------------------------------------

upper sequence: GLYMA10G02700.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0104g01150.t01 (Vitis vinifera), 5'ss of exon 6
CCAAGTTTCTAACATGCCGCAGGCTGATCCT---CAACATCCCTCATTATTTGGAGCCTTGCCAATGGGTTATGTTCCTCCATATAATGGATATGGTTATCAGgttagttctgctataatgcattattagaataataacattttcccccttaattcagggaacttttcttctgtacaatcatgtcgtcctatgagaaattattacatttatggattaatgtctgttatttttcctgcctaacatcttgatggaggtatatgtttgaataatcattttttctcaatag
    |  |||||  ||||    |||||| |    || ||||| ||||||||||||||||||||  | ||||||||||| ||||| ||||||||||||||||||||||||     | |      ||||||  ||| |    || |      |||| ||  |    |||   |  |    |     | || |  |     |||  | ||    | | |||                                                                     
---GGCATCTAATTTGCCAAGTGCTGATTCAGGACAGCATCCTTCATTATTTGGAGCCTTGCCTCTTGGTTATGTTCCCCCATACAATGGATATGGTTATCAGgttagtctcattgt------ttattactata-tgcagttgtttgatataatgcaatg---ctttagccaatgtg-ttggaacatcttg-ggacggttaccatatc---gtaataa---------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58016439|gb|CX703181.1|CX703181
EST:     GAGCCTTGCCAATGGGTTATGTTCCTCCATATAATGGATATGGTTATCAG                         GCTCCCGGGGGTTATGGGCTCATGGCATACCGTTTTCCACCAATGCAGAAT
genomic: GAGCCTTGCCAATGGGTTATGTTCCTCCATATAATGGATATGGTTATCAGgttagttctg ... ttctcaatagGCTCCCGGGGGTTATGGGCTCATGGCATACCGTTTTCCACCAATGCAGAAT