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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGCCTCCTGTATTGCCTGGTTCATATGTACAAGGGGCTTATGGTCCTGTACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagagggacatgtgtgtgtgtgtagagaaaagtcaaaacattttttatttcagcagttgcgttattctgacatttttaaattggtgcag

Basic information

species Glycine max
transcript GLYMA10G02550.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G02550.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0104g01460.t01 (Vitis vinifera), 5'ss of exon 5
CAGGCCTCCTGTATTGCCTGGTTCATATGTACAAGGGGCTTATGGTCCTGTACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagagggacatgtgtgtgtgt-gtagagaaaagtcaaaacattttttatttcagcagttgcgttattctgacatttttaaattggtgcag
 |||||||| ||||| |||||||||||||| |||||  ||||||||||||| ||  |  | ||||| || || |   |||| || ||||||| |||||||||  |    |||  | | | | |  ||  ||   || |||      | | ||||     |   |||| | | | || ||  |          
AAGGCCTCCAGTATTACCTGGTTCATATGTGCAAGGCCCTTATGGTCCTGTTCTGTTCCCCCCAGGAGTGGTTCCTATTCCGGGTTGGAGTCCTTATTCGgtatgttacacaattttctttttcatattgagttgtaaaagatgcatatgtttc--tcataatgttagttt-atatgttgcag---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298185426|gb|HO030639.1|HO030639
EST:     TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG                         GCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCC
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagaggga ... attggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCC
EST: gi|193555678|gb|FK513225.1|FK513225
EST:     TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG                         GCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCC
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagaggga ... attggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCC
EST: gi|193604339|gb|FK558968.1|FK558968
EST:     TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG                         GCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCC
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagaggga ... attggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCC
EST: gi|208284802|gb|GE085616.1|GE085616
EST:     TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG                         GCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCC
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagaggga ... attggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCC
EST: gi|193643223|gb|FK586912.1|FK586912
EST:     TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG                         GCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCGACCTACTGTTGGGGCC
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagaggga ... attggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCC
EST: gi|193324281|gb|FK288389.1|FK288389
EST:     CTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTTTCATTATTCG                         GCACCTGTAAGTCCTGTGCTATCTCCTGG
genomic: CTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGT--CATTATTCGgtgagaggga ... attggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGG
EST: gi|207754735|gb|GD729316.1|GD729316
EST:     TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG                         GCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCC
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagaggga ... attggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCC
EST: gi|208178335|gb|GD978288.1|GD978288
EST:     TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG                         GCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCC
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagaggga ... attggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCC
EST: gi|207783570|gb|GD758062.1|GD758062
EST:     TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG                         GCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCC
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagaggga ... attggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCC
EST: gi|193684651|gb|FK622259.1|FK622259
EST:     TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG                         GCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCC
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagaggga ... attggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCC
EST: gi|193321144|gb|FK286988.1|FK286988
EST:     TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG                         GCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCC
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagaggga ... attggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAGGCCTCCTGTATTGCCTGGTTCATATGTACAAGGGGCTTATGGTCCTGTACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagagggacatgtgtgtgtgtgtagagaaaagtcaaaacattttttatttcagcagttgcgttattctgacatttttaaattggtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA