Sequence
atgc intronic sequence ATGC exonic sequenceGATATTGTCATGTATGTAAATTCTCCAGGAGGGTCGGTTACAGCTGgtaatagttttttagttaaaactatcttgctttgttttttttattattatattatattcatctacatgggctaaaaatatattgtatcccaaatattaaaatgctttctttgttattcttttccccttag
Basic information
species | Glycine max |
transcript | GLYMA10G01550.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G01550.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G121456_T03 (Zea mays), 5'ss of exon 5
GATATTGTCATGTATGTAAATTCTCCAGGAGGGTCGGTTACAGCTGgtaatagttt-tttagttaaaactatcttgctttgttttttttattattatattatattcatctacatgggctaaaaatatattgtatcccaaatattaaaatgctttctttgttattcttttccccttag
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GATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGgtaatagctcatctaacatagtatgtctgcgttagctgcttcaatta--atacta-atgcattttcgttttctgttag-----------------------------------------------------
upper sequence: GLYMA10G01550.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G02560.1 (Arabidopsis thaliana), 5'ss of exon 5
GATATTGTCATGTATGTAAATTCTCCAGGAGGGTCGGTTACAGCTGgtaatagttttttagttaaaactatcttgctttgttttttttattattatattatattcatctacatgggctaaaaatatattgtatcccaaatattaaaatgctttctttgttattcttttccccttag
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GATATTGTCATGTATGTTAATTCTCCTGGTGGATCAGTTACAGCTGgtaataacaactttgtcag------cttactctttatctttt-ttccggttttatggttaatgactcgtgc--atctcttactttacccag---------------------------------------
upper sequence: GLYMA10G01550.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0005g01530.t01 (Vitis vinifera), 5'ss of exon 5
GATATTGTCATGTATGTAAATTCTCCAGGAGGGTCGGTTACAGCTGgtaatagttttttagttaaaactatcttgctttgttttttttattattatattatattcatctacatgggctaaaaatatattgtatcccaaatattaaaatgctttctttgttattcttttccccttag
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GATATTGTCATGTATGTGAACTCTCCAGGAGGATCAGTTACAGCTGgtaat---ttctgtcttacaataaatttttcttcacactggtactagtttatttaactga---gcatgg---agacttgtacaggttcttattttcttgaattcttccttatttatcccctcag------
upper sequence: GLYMA10G01550.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ35520 (Selaginella moellendorffii), 5'ss of exon 4
GATATTGTCATGTATGTAAATTCTCCAGGAGGGTCGGTTACAGCTGgtaatagttttttagttaaaactatcttgctttgttttttttattattatattatattcatctacatgggctaaaaatatattgtatcccaaatattaaaatgctttctttgttattcttttccccttag
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GATATTGTCATGTATGTAAATTCACCTGGAGGTTCCGTTACCGCTGgta-tggttttttttttttttccctatcgagttgtcagct--aacaatttattttctt--tctgctcag-------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192320644|gb|FK012726.1|FK012726EST: GATATTGTCATGTATGTAAATTCTCCAGGAGGGTCGGTTACAGCCG GAATGGCTATATTTGATACAATGAGGCATATCCGACCTGACGTGTCTACTG
genomic: GATATTGTCATGTATGTAAATTCTCCAGGAGGGTCGGTTACAGCTGgtaatagttt ... ttccccttagGAATGGCTATATTTGATACAATGAGGCATATCCGACCTGATGTGTCTACTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATATTGTCATGTATGTAAATTCTCCAGGAGGGTCGGTTACAGCTGgtaatagttttttagttaaaactatcttgctttgttttttttattattatattatattcatctacatgggctaaaaatatattgtatcccaaatattaaaatgctttctttgttattcttttccccttag
- - - - - - - - - - - - - - - - - - - - CAGCTG