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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCTTACCTATCAATGAACTTGATTCCTGGCTGAAGACCCCATCAATTTATGTTTTTGATTGCTCTGCGGCTGGGATGATTGTGAATTCCTTCATTGAGgtatccactcaaaaccatgttgttaaatacgtataataaaactgcaaatgtatttgtactgactttgtcttttttgtaatttggatgccaaatttgttactggacttgttattgataag

Basic information

species Glycine max
transcript GLYMA09G41510.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G41510.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os11g01872.1 (Oryza sativa), 5'ss of exon 4
TCCCTTACCTATCAATGAACTTGATTCCTGGCTGAAGACCCCATCAATTTATGTTTTTGATTGCTCTGCGGCTGGGATGATTGTGAATTCCTTCATTGAGgtat----ccactcaaaaccatgttgttaaatacgtataata----aaactgcaaatg-tatttgtactgactttgtcttttttgtaatttggatgccaaatttgtt-actggacttgttattgataag-----
|||  | || || | ||| |||||||| |||||||| || || || || ||||||||||| ||||| || ||||| |||||||||||  | ||  | |||||||        ||      || ||  ||  ||||    |||    ||  || || || || |  |  |  | |     ||| | |  || |  ||   ||| | || |||     |  |  || | |      
TCCGCTTCCCATTACTGATCTTGATTCATGGCTGAAAACACCTTCTATATATGTTTTTGACTGCTCAGCAGCTGGAATGATTGTGAAAGCTTTTCTGGAGgtatggtatagttccttctaatttttatacgtacgccagatacttgaagttgaaagtgataatgatgatttcctatctgtttctattgttagactgtttaatatattcactatgactactcatgttcactttag

upper sequence: GLYMA09G41510.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G048067_T02 (Zea mays), 5'ss of exon 5
TCCCTTACCTATCAATGAACTTGATTCCTGGCTGAAGACCCCATCAATTTATGTTTTTGATTGCTCTGCGGCTGGGATGATTGTGAATTCCTTCATTGAGgtat--------ccactcaaaaccatgttgttaaatacgt---ataataaaactgcaaatgtatttgtactgactttgtcttttttgtaatttggatgccaaat-ttgttactggacttgttattgataag
|||  | || || | ||| |||||||| ||||||||||| || |||||||| |||||||||||||| ||| |||| || ||||||||  | ||  | |||||||        |  || |  | ||| |  ||   |  |    |  || ||  |    ||| |||| |       || |  |||||||   | |  || | ||| ||  ||  |   ||  | |   | ||
TCCACTTCCAATTACTGATCTTGATTCATGGCTGAAGACACCTTCAATTTACGTTTTTGATTGCTCAGCGTCTGGAATTATTGTGAAAGCTTTTCTAGAGgtatgctacatgcttctaattaacatatgtttctctgtgctcgaagatgaaggtcatcatg-atttatgggcttgtttttgtttttgttcctggattgtctaatattcataacgacttttgtttacttcag

upper sequence: GLYMA09G41510.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G08850.1 (Arabidopsis thaliana), 5'ss of exon 5
TCCCTTACCTATCAATGAACTTGATTCCTGGCTGAAGACCCCATCAATTTATGTTTTTGATTGCTCTGCGGCTGGGATGATTGTGAATTCCTTCATTGAGgtatccactcaaaaccatgttgttaaatacgtataataaaactgcaaatgtattt-gtact-gactttgtcttttttgtaatttggatgccaaatttgttactggacttgttattgataag
|||||| || |||| |||||||||||||||| ||||||| || || || |||||||| || |||||||| ||| |||||||| ||||| ||||   |||||||       | |||||  |   |       || || | | || |    |  ||| | ||| || | |||  |||| ||  |    | |   |     ||  |  |||  |||  |  |  
TCCCTTGCCAATCAGTGAACTTGATTCCTGGTTGAAGACACCCTCCATCTATGTTTTCGACTGCTCTGCTGCTAGGATGATTCTGAATGCCTTTGCTGAGgtaaaggaa-acaaccacttcact-----tatagaacacatctcctgtcgagtttaggactcgagtctgtaattttcgt--tccataagttgataaaattcatatactctttac-gccag-

upper sequence: GLYMA09G41510.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 5
TCCCTTACCTATCAATGAACTTGATTCCTGGCTGAAGACCCCATCAATTTATGTTTTTGATTGCTCTGCGGCTGGGATGATTGTGAATTCCTTCATTGAGgtatccactcaaaaccatgttgttaaatacgta---taataaaactgcaaatgtatttgtactgact------ttgtcttttttgtaatttggatgccaaatttgttactggacttgttattgataag----
 ||||| || ||||  || || ||||||||| ||||||| || ||||| |||||||||||||||||||| |||||||||||||| ||| ||||||| ||||||| ||       |  |  |||||||| | ||   |  |||    |  | | |  ||||| |||        |||   |  || |  | ||  |  |    || | |   || | |||  |  |  |    
CCCCTTGCCAATCAGCGACCTGGATTCCTGGTTGAAGACACCGTCAATATATGTTTTTGATTGCTCTGCTGCTGGGATGATTGTCAATGCCTTCATAGAGgtattcaacagtgccttttctgttaaatgcttaattttttaatgtggtgattttggttgtaatgatgctagaattgatatcattattctctgattctctggattttaataagattggttgatcttctggcag