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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGAAACTTCCAAGTCATTACCTTGTTTCTCCACCAGAGATTGACAGGACTTCTGGTGAATATTTAGTGTATAATGGTATTCGGACTTTTGCTTGCAGgtagttgtcttttatcactattttaatcgttagtaggatttttattatactgtaatttatggaagaccataatacttctacctgcttattctgtttttgt...

Basic information

species Glycine max
transcript GLYMA09G40690.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G40690.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os05g40420.1 (Oryza sativa), 5'ss of exon 6
AATTGAAACTTCCAAGTCATTACCTTGTTTCTCCACCAGAGATTGACAGGACTTCTGGTGAATATTTAGTGTATAATGGTATTCGGACTTTTGCTTGCAGgtagttgtcttttatcactattttaatcgttagtaggatttttattatactgtaatttatggaagaccataatacttctacctgcttatt-ctgtttttgt-------
|  |||| |||||||| || ||||||||||| |||||||||||||| ||||| || |||||||| || ||| | ||||| || || || |||||||||||| |  | | |||| |||| |||||     | | | ||||  | |    | || |||  || |  ||  ||  |  |        | |||  |||||||| |       
AGCTGAAGCTTCCAAGCCACTACCTTGTTTCACCACCAGAGATTGAGAGGACATCCGGTGAATACTTGGTGAAAAATGGCATCCGCACCTTTGCTTGCAGgcaagtttttttt-tcaccattttc----tcaattggatactaaactgattg-aatcaattgtgga--atgcttttctcggggacatatggctgtttttattcagcca

upper sequence: GLYMA09G40690.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os05g40420.3 (Oryza sativa), 5'ss of exon 6
AATTGAAACTTCCAAGTCATTACCTTGTTTCTCCACCAGAGATTGACAGGACTTCTGGTGAATATTTAGTGTATAATGGTATTCGGACTTTTGCTTGCAGgtagttgtcttttatcactattttaatcgttagtaggatttttattatactgtaatttatggaagaccataatacttctacctgcttatt-ctgtttttgt-----------
    ||| |||||||| || ||||||||||| |||||||||||||| ||||| || |||||||| || ||| | ||||| || || || |||||||||||| |  | | |||| |||| |||||     | | | ||||  | |    | || |||  || |  ||  ||  |  |        | |||  |||||||| |           
----GAAGCTTCCAAGCCACTACCTTGTTTCACCACCAGAGATTGAGAGGACATCCGGTGAATACTTGGTGAAAAATGGCATCCGCACCTTTGCTTGCAGGCAAgtttttttt-tcaccattttc----tcaattggatactaaactgattg-aatcaattgtgga--atgcttttctcggggacatatggctgtttttattcagccaatct

upper sequence: GLYMA09G40690.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g60190.1 (Oryza sativa), 5'ss of exon 6
AATTGAAACTTCCAAGTCATTACCTTGTTTCTCCACCAGAGATTGACAGGACTTCTGGTGAATATTTAGTGTATAATGGTATTCGGACTTTTGCTTGCAGgtagttgtct--tttatcactattttaatcgttagtaggatttttattatactgtaatttatggaagaccataatacttctacc-tgcttattctgtttttgt
| ||||| ||||| || ||||||||||| || ||||||||||| || || || ||||||||||| || ||  | |||||  | || || || ||||||||| |  |  ||   ||  |||| | ||   |  |  ||  |    ||||     || | |||   |         |||||   || |        || ||    
AGTTGAAGCTTCCGAGCCATTACCTTGTCTCCCCACCAGAGATAGAGAGAACATCTGGTGAATACTTGGTAAAGAATGGCGTCCGCACCTTCGCTTGCAGgcaagtacctggcttcccactctcttt-cctctgatactaaaaatattgactggtgacttagtaatttttgaggtacttaggccataagggagttgattca--

upper sequence: GLYMA09G40690.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM5G833389_T02 (Zea mays), 5'ss of exon 6
AATTGAAACTTCCAAGTCATTACCTTGTTTCTCCACCAGAGATTGACAGGACTTCTGGTGAATATTTAGTGTATAATGGTATTCGGACTTTTGCTTGCAGgtagttgtcttttatcactattttaatcgttagtaggatttttattatactgtaat-ttatggaagaccataatacttct--acctgcttattctgtttttgt
| ||||| |||||||| | |||||||||||| ||||||||||| || || || ||||| || || || ||| | ||||| || || || |||||||||||| |  |    | |||  ||       ||  | |     |||||||| ||||  ||| |  |  ||   | || |  ||||    |  || | || |  |    
AGTTGAAGCTTCCAAGCCGTTACCTTGTTTCCCCACCAGAGATAGATAGAACATCTGGGGAGTACTTGGTGAAGAATGGCATCCGCACCTTTGCTTGCAGgcaagtactatctatttctcagcctttctcttgatacttttttatt-tacttcaatatcgtaaaatcacttagtttttctgagtcatctaagtcagcatgc--

upper sequence: GLYMA09G40690.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G003385_T02 (Zea mays), 5'ss of exon 6
AATTGAAACTTCCAAGTCATTACCTTGTTTCTCCACCAGAGATTGACAGGACTTCTGGTGAATATTTAGTGTATAATGGTATTCGGACTTTTGCTTGCAGgtagttgtcttttatcact-attttaatcgttagtaggatttttattatactgtaatttatggaagaccataatacttctacctgcttattctgtttttgt
| ||||| ||||||||||  ||||||||||| ||||||||||| || || || ||||| || || || ||| | ||||| || || || |||||||||||| |  |    | | ||  | |         ||  ||   |||||  |  |||  ||| |    ||   | | |  | ||||  |    ||  |   |||||
AGTTGAAGCTTCCAAGTCGCTACCTTGTTTCCCCACCAGAGATAGATAGAACATCTGGGGAGTACTTGGTGAAGAATGGCATCCGCACCTTTGCTTGCAGgcaagtactatatgtctttcagcccttctcttgataccttttttgct-cacttcaatatcgtaaatctcttgagtcatctaagtcagcatcgttcatttgt

upper sequence: GLYMA09G40690.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G09780.1 (Arabidopsis thaliana), 5'ss of exon 3
AATTGAAACTTCCAAGTCATTACCTTGTTTCTCCACCAGAGATTGACAGGACTTCTGGTGAATATTTAGTGTATAATGGTATTCGGACTTTTGCTTGCAGgtagtt-gtcttttatcact-----attttaatcgttagtaggatttttattatactgtaattta---tggaagaccataatacttctac-ctgcttattctgtttttgt--------------------------------------------------------
|  | || || ||||| | ||||||||||||||| || |||||||| || || ||||||||||||||     | |||||  |  | ||||||||||||||||| ||   ||| | ||  |     | ||| |    | ||   ||  ||  | || | || ||     ||   |  ||| |||  ||||  ||     ||   ||||||                                                         
AGCTTAAGCTACCAAGCCGTTACCTTGTTTCTCCCCCGGAGATTGATAGAACATCTGGTGAATATTTGACTCACAATGGCGTCAGTACTTTTGCTTGCAGgtatttcaacttctgtccttttctcactttgagtaatggttatatgctttgtttagtatagttccagttgcttgctcattataggtctatactatgctttgcatttttgccaatagtgtatcacgcttgaactgatcatatatattaatgtatgtgactgaaacag

upper sequence: GLYMA09G40690.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G08590.2 (Arabidopsis thaliana), 5'ss of exon 4
AATTGAAACTTCCAAGTCATTACCTTGTTTCTCCACCAGAGATTGACAGGACTTCTGGTGAATATTTAGTGTATAATGGTATTCGGACTTTTGCTTGCAGgtagttgtcttttatcactattttaatcgttagt-aggatttttattatactgtaatttatggaagaccataatacttctacctgcttattctgtttttgt---
|  | || ||||| || |  || |||||||||||||||  ||||||||| ||||||||||||||| | |   | |||||  |||| ||||||||||||||   |||  ||||||  |    |  |||| ||||| |   | |||   ||  | |  | | ||      | |  |   | ||  ||||     ||  ||  |   
AGCTTAAGCTTCCTAGCCGCTATCTTGTTTCTCCACCATTGATTGACAGAACTTCTGGTGAATATCTGGCACACAATGGCGTTCGTACTTTTGCTTGCAG-

upper sequence: GLYMA09G40690.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv08s0056g00200.t01 (Vitis vinifera), 5'ss of exon 5
AATTGAAACTTCCAAGTCATTACCTTGTTTCTCCACCAGAGATTGACAGGACTTCTGGTGAATATTTAGTGTATAATGGTATTCGGACTTTTGCTTGCAGgtagttgtcttttatcactattttaatcgttagtaggatttttattatactgtaatttatggaagaccataatacttctacctgcttattctgtttttgt-
| ||||| ||||| | |||||||||||||||||| |||||||| || || || |||||||||||||||||| | |||||| |||| |||||||||||||||||   ||     || |  | ||   |  | |  | ||  |  | |  | | | |||  | |  ||   |||   ||    ||  ||  ||    ||  | 
AGTTGAAGCTTCCCAATCATTACCTTGTTTCTCCTCCAGAGATAGAGAGAACATCTGGTGAATATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAGgtaag-gtggcagataatgaattgtgttatcatcaagaactaaaattaattattattatttgttgaagttaactatttgttctttttcatcaacattcatt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7925554|gb|AW831589.1|AW831589
EST:     ACTTCTGGTGAATATTTAGTGTATAATGGTATTCGGACTTTTGCTTGCAG                         TGAGACTGTTAAATTTGGTCACGTCACATTCTTCTGGAATGGAAACCGCTC
genomic: ACTTCTGGTGAATATTTAGTGTATAATGGTATTCGGACTTTTGCTTGCAGgtagttgtct ... ttgtcaacagTGAGACTGTTAAATTTGGTCACGTCACATTCTTCTGGAATGGAAACCGCTC
EST: gi|33387910|gb|CA851117.1|CA851117
EST:     ACTTCTGGTGAATATTTAGTGTATAATGGTATTCGGACTTTTGCTTGCAG                         TGAGACTGTTAAATTTGGCCACGTCACATTCTTCTGGAATGGAAACCGCTC
genomic: ACTTCTGGTGAATATTTAGTGTATAATGGTATTCGGACTTTTGCTTGCAGgtagttgtct ... ttgtcaacagTGAGACTGTTAAATTTGGTCACGTCACATTCTTCTGGAATGGAAACCGCTC
EST: gi|298197962|gb|HO039501.1|HO039501
EST:     ACTTCTGGTGAATATTTAGTGTATAATGGTATTCGGACTTTTGCTTGCAG                         TGAGACTGTTAAATTTGGTCACGTCACATTCTTCTGGAATGGAAACCGCTC
genomic: ACTTCTGGTGAATATTTAGTGTATAATGGTATTCGGACTTTTGCTTGCAGgtagttgtct ... ttgtcaacagTGAGACTGTTAAATTTGGTCACGTCACATTCTTCTGGAATGGAAACCGCTC
EST: gi|151401069|gb|EV270883.1|EV270883
EST:     ACTTCTGGTGAATATTTAGTGTATAATGGTATTCGGACTTTTGCTTGCAG                         TGAGACTGTTAAATTTGGTCACGTCACATTCCTCTGGAATGGAAACCGCTC
genomic: ACTTCTGGTGAATATTTAGTGTATAATGGTATTCGGACTTTTGCTTGCAGgtagttgtct ... ttgtcaacagTGAGACTGTTAAATTTGGTCACGTCACATTCTTCTGGAATGGAAACCGCTC
EST: gi|10845255|gb|BF068411.1|BF068411
EST:     ACTTCTGGTGAATATTTAGTGTATAATGGTATTCGGACTTTTGCTTGCAG                         TGAGACTGTTAAATTTGGCCACGTCACATTCTTCTGGAATGGAAACCGCTC
genomic: ACTTCTGGTGAATATTTAGTGTATAATGGTATTCGGACTTTTGCTTGCAGgtagttgtct ... ttgtcaacagTGAGACTGTTAAATTTGGTCACGTCACATTCTTCTGGAATGGAAACCGCTC
EST: gi|254344788|gb|GR855552.1|GR855552
EST:     ACTTCTGGTGAATATTTAGTGTATAATGGTATTCGGACTTTTGCTTGCAG                         TGAGACTGTTAAATTTGGCCACGTCACATTCTTCTGAAATGGAAACCGCTC
genomic: ACTTCTGGTGAATATTTAGTGTATAATGGTATTCGGACTTTTGCTTGCAGgtagttgtct ... ttgtcaacagTGAGACTGTTAAATTTGGTCACGTCACATTCTTCTGGAATGGAAACCGCTC
EST: gi|33390329|gb|CA853524.1|CA853524
EST:     ACTTCTGGTGAATATTTAGTGTATAATGGTATTCGGACTTTTGCTTGCAG                         TGAGACTGTTAAATTTGGCCACGTCACATTCTTCTGGAATGGAAACCGCTC
genomic: ACTTCTGGTGAATATTTAGTGTATAATGGTATTCGGACTTTTGCTTGCAGgtagttgtct ... ttgtcaacagTGAGACTGTTAAATTTGGTCACGTCACATTCTTCTGGAATGGAAACCGCTC
EST: gi|10845312|gb|BF068459.1|BF068459
EST:     CGGACTTTTGCTTGCAG                         TGAGACTGTTAAATTTGGTCACGTCACATTCTTCTGGAATGGAAACCGCTC
genomic: CGGACTTTTGCTTGCAGgtagttgtct ... ttgtcaacagTGAGACTGTTAAATTTGGTCACGTCACATTCTTCTGGAATGGAAACCGCTC
EST: gi|254346934|gb|GR856656.1|GR856656
EST:     ACTTCTGGTGAATATTTAGTGTATAATGGTATTCGGACTTTTGCTTGCAG                         TGAGACTGTTAAATTTGGTCACGTCACATTCTTCTGGAATGGAAACCGCTC
genomic: ACTTCTGGTGAATATTTAGTGTATAATGGTATTCGGACTTTTGCTTGCAGgtagttgtct ... ttgtcaacagTGAGACTGTTAAATTTGGTCACGTCACATTCTTCTGGAATGGAAACCGCTC