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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGAGTATGTACCTGAAACTGTCTACAGAGTTTCAAAGCACTATGTCAGAATGCACCAACATATGCCTATCATTAATGTGCAACTGTATACATACCAGgtaatctagaaattttaaattgattgacctttttttttttaattttttggttaagtttctctgatcatgcttatagtattcggttatttactttgagcttattacttttgtgctgttattgattgatcttgccaacactctcatag

Basic information

species Glycine max
transcript GLYMA09G40150.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G40150.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0048g02010.t01 (Vitis vinifera), 5'ss of exon 5
TTTGGAGTATGTACCTGAAACTGTCTACAGAGTTTCAAAGCACTATGTCAGAATGCACCAACATATGCCTATCATTAATGTGCAACTGTATACATACCAGgt-aatctagaaattttaaattgattgacctttttttttt-taattttttggttaagtttctctgatcatgctt--atagtattcggttatttactttgagcttattacttttgtgctgttatt--gattgatcttgccaacactctcatag
  | ||||||||| |||||||||||||| ||||||||| |||  |   ||| ||| |||| || ||||| || ||  |||||||||||||| |||||||||| ||  | ||| || |  ||| | |  | |  |||  ||  ||       |||   || ||    | || ||   ||   |||   || ||     |    ||||| | ||| |  ||| |||    ||  | ||     | || |   ||
CCTTGAGTATGTATCTGAAACTGTCTACCGAGTTTCAAGGCATCACAGCAGGATGAACCAGCACATGCCCATTATATATGTGCAACTGTATGCATACCAGgtgaactttgaagttgtgtattaagtatcttaatttggttgcaaggcaactgttgcattgctggatttatactgtaattacatttccttcttgtgcctacctttatttcatttatattgtaatttcatttagtattattttc-cttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192297025|gb|FG990311.1|FG990311
EST:     GAATGCACCAACATATGCCTATCATTAATGTGCAACTGTATACATACCAG                         ATATGTCGGGGTTTAAATTATTTGCATCATGTGATTGGAGTCTGCCATCGG
genomic: GAATGCACCAACATATGCCTATCATTAATGTGCAACTGTATACATACCAGgtaatctaga ... actctcatagATATGTCGGGGTTTAAATTATTTGCATCATGTGATTGGAGTCTGCCATCGG