Sequence
atgc intronic sequence ATGC exonic sequenceAATCTGATCCTGTGTGGGTGATGAATGTAGTTCCAGCACAAAAGCCACCTACTCTTGATGTTATCTTTGACAGAGGTCTTATTGGAGTTTATCATGATTGgtgagctttttctgaatgtttcagtgtttcttgtcttaaaggaattatcccgaatctttcaagctctgatcttttgacacgtcttggaaaataaacttct...
Basic information
species | Glycine max |
transcript | GLYMA09G40110.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G40110.2 (Glycine max), 5'ss of exon 5
lower sequence: AT4G00740.1 (Arabidopsis thaliana), 5'ss of exon 5
AATCTGATCCTGTGTGGGTGATGAATGTAGTTCCAGCACAAAAGCCACCTACTCTTGATGTTATCTTTGACAGAGGTCTTATTGGAGTTTATCATGATTGgtgagctttttctgaatgtttcagtgtttcttgtcttaaaggaatta--tcccgaatctttcaagctctg-atctt-----ttgacacgtcttggaaaataaacttct--------------------------------------------
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CATCTGATCCTGTGTGGGTTATGAATGTCATTCCAGCTCGGAAGCCATTAACTCTTGACGTGATTTATGACAGAGGTCTCATCGGTGTTTACCATGATTGgttagtcacatttgt-tgtttatatatttgatcaaaataaagacttagatatgttatctctcttgttctgtatcttagccattggcagcaatgaggatcgaaatatgtcacaattccttaatagtcaaaaccctattatttgtttgttgcag
upper sequence: GLYMA09G40110.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0048g01990.t01 (Vitis vinifera), 5'ss of exon 5
AATCTGATCCTGTGTGGGTGATGAATGTAGTTCCAGCACAAAAGCCACCTACTCTTGATGTTATCTTTGACAGAGGTCTTATTGGAGTTTATCATGATTGgtgagctttttctgaatgtttcagtgtttcttgtcttaaaggaattatcccgaatctttcaagctctgatcttttgacacgtcttggaaaataaacttct------
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CGTCTGATCCTGTGTGGGTGATGAATGTTGTTCCTCCCCGCAAGCCATCAACTCTGGGAGTCATTTATGACAGAGGTCTTATTGGGGTCTACCATGATTGgtgagttactgtgtcatgtgcta----ctcttgtct--acggaataaatatgcacctgggttgaaatgaagtgttttagagtcatagattagccaccttcatatcgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7692698|gb|AW760799.1|AW760799EST: ACTCTTGATGTTATCTTTGACAGAGGTCTTATTGGAGTTTATCATGATTG GTGCGAACCATTTTCAACATATCCTCGTAGCTATGATCTAATCCATGTGGT
genomic: ACTCTTGATGTTATCTTTGACAGAGGTCTTATTGGAGTTTATCATGATTGgtgagctttt ... atgttcccagGTGCGAACCATTTTCAACATATCCTCGTAGCTATGATCTAATCCATGTGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATCTGATCCTGTGTGGGTGATGAATGTAGTTCCAGCACAAAAGCCACCTACTCTTGATGTTATCTTTGACAGAGGTCTTATTGGAGTTTATCATGATTGgtgagctttttctgaatgtttcagtgtttcttgtcttaaaggaattatcccgaatctttcaagctctgatcttttgacacgtcttggaaaataaacttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG