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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAACAGATTTGCCCTTTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTCATGGTTTTAATAAGgttcatattcttccatcaaattcaaccatctatctgttatttcatccatgtttttagttcacaccattttagtttgatttgacatctcatttttgtaatattgataagttttgctgttgtaaaattcgtatatttgtgtcctactatccttatgtttttatcttctattatacag

Basic information

species Glycine max
transcript GLYMA09G39150.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G39150.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM5G813909_T01 (Zea mays), 5'ss of exon 5
ATAACAGATTTGCCCTTTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTCATGGTTTTAATAAGgttcatattcttccatcaaattcaaccatctatctgttatttcatccatgtttttagttcacacc--attttagtttgatttgacatctcatttttgtaatattgataagttttgctgttgtaaaattcgtatatttgtg-tcctactatccttatgtttttat--cttc-tattatacag
|| ||||| ||||| || ||||| || ||||||||||| || ||||| || ||||||||||| |||||   | |  |    |    ||   || | ||| ||||  |        | |   | |  |||    | ||| |     |      | | ||   |     | | |   |  ||     | |   ||    || ||  || | ||  ||| || |  ||| |||  |||| |    |  ||
ATTACAGACTTGCCGTTCTCTCTCTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAGgtgtgt-tcatatttttttgtttttccttgtatttgttgcta-gctaggggtaggaatatacattgaaatttggcaacttgcagtgttttataactactgaagtaactgggcttatgaatttcttatcttcattttcctgatacttttatactgagatttctattgcttcatgccttgtag

upper sequence: GLYMA09G39150.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0046g02040.t01 (Vitis vinifera), 5'ss of exon 5
ATAACAGATTTGCCCTTTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTCATGGTTTTAATAAGgttcatattcttccatcaaattcaaccatctatctgttatttcatccatgtttttagttcacaccattttagtttgatttgacatctcatttttgtaatattgataagttttgctgttgtaaaattcgtatatttgtgtcctactatccttatgtttttatcttctattatacag
|| || |||||||| |||||||| |||||||||||||||||||||||||| |||||||| || || |||  ||||| | | || |  ||       ||| ||| ||||| |   ||||||| |   |  |  | || |   ||| | |    |   ||| | || |||  | |                                                                    
ATTACTGATTTGCCATTTTCTCTATACTCAACTTTTGTGATTGAGGCCCGCCATGGTTTCAACAAAgtttgtattcattcttctatctccttatcatatttgtgatttctt---tgttttttg---aatctgtatttggaagatctaaggctt--gtttggcaacattttttaa-------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207843659|gb|GD813872.1|GD813872
EST:     TTTTGTGATTGAGGCCCGTCATGGTTTTAATAAG                         CAAACACCATGGTTATTCTTTAGGGACATGCTTAAAGGAATTTTCCTTTCT
genomic: TTTTGTGATTGAGGCCCGTCATGGTTTTAATAAGgttcatattc ... tattatacagCAAACACCATGGTTATTCTTTAGGGACATGCTTAAAGGAATTTTCCTTTCT
EST: gi|193463989|gb|FK428319.1|FK428319
EST:     TTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTCATGGTTTTAATAAG                         CAAACACCATGGTTATTCTTTAGGGACATGCTTAAAGGAATTTTCCTTTCT
genomic: TTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTCATGGTTTTAATAAGgttcatattc ... tattatacagCAAACACCATGGTTATTCTTTAGGGACATGCTTAAAGGAATTTTCCTTTCT
EST: gi|15202361|gb|BI425361.1|BI425361
EST:     TTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTCATGGTTTTAATAAG                         CAAACACCATGGTTATTCTTTAGGGAC
genomic: TTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTCATGGTTTTAATAAGgttcatattc ... tattatacagCAAACACCATGGTTATTCTTTAGGGAC
EST: gi|192302658|gb|FG994896.1|FG994896
EST:     TTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTCATGGTTTTAATAAG                         CAAACACCATGGTTATTCTTTAGGGACATGCTTAAAGGAATTTTCCTTTCT
genomic: TTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTCATGGTTTTAATAAGgttcatattc ... tattatacagCAAACACCATGGTTATTCTTTAGGGACATGCTTAAAGGAATTTTCCTTTCT
EST: gi|207689928|gb|GD672433.1|GD672433
EST:     TTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTCATGGTTTTAATAAG                         CAAACACCATGGTTATTCTTTAGGGACATGCTTAAAGGAATTTTCCTTTCT
genomic: TTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTCATGGTTTTAATAAGgttcatattc ... tattatacagCAAACACCATGGTTATTCTTTAGGGACATGCTTAAAGGAATTTTCCTTTCT
EST: gi|213594940|gb|DB971799.1|DB971799
EST:     TTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTCATGGTTTTAATAAG                         CAAACACCATGGTTATTCTTTAGGGACATGCTTAAAGGAATTTTCCTTTCT
genomic: TTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTCATGGTTTTAATAAGgttcatattc ... tattatacagCAAACACCATGGTTATTCTTTAGGGACATGCTTAAAGGAATTTTCCTTTCT