Sequence
atgc intronic sequence ATGC exonic sequenceAGTAATGGAGTATTTCCATGATTGTGGATATCTTTCAATTTTATGGGAATGCGGAGGAACATTGGCTGCATCTGCTATTTCATCTGGAGTAATTCACAAGgtgtggttcatactttcatttttctttttctctgggaaaaatttaaatgaagttccacttgttattggcatagttaggatacttttcaattgttgcaact...
Basic information
species | Glycine max |
transcript | GLYMA09G38520.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G38520.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G47390.2 (Arabidopsis thaliana), 5'ss of exon 8
AGTAATGGAGTATTTCCATGATTGTGGATATCTTTCAATTTTATGGGAATGCGGAGGAACATTGGCTGCATCTGCTATTTCATCTGGAGTAATTCACAAGgtgtggttcatact---ttcatttttctttttctctgggaaaaatttaaatgaagttccacttgttattggcatagttaggatacttttcaat-tgttgcaact-----
||| ||||| ||||||||| ||||||||||||| || ||||||| || || |||||||| |||||||||||||| ||||| | || || |||||||| | ||||| | ||| || ||| | | ||| | | | || | | || | | || | | ||||| | | || |
AGTTATGGAATATTTCCATCTCCGTGGATATCTTTCTATACTATGGGAGTGTGGGGGAACATTAGCTGCATCTGCTATATCATCCAGTGTCATCCACAAGgtacccattatactatatccatacttatttgtagtcatcttatgtttttgtctggctaaacctcattttcttacactt---ctttctctcaatgtaattcatttttcag
upper sequence: GLYMA09G38520.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0023g00680.t01 (Vitis vinifera), 5'ss of exon 5
AGTAATGGAGTATTTCCATGATTGTGGATATCTTTCAATTTTATGGGAATGCGGAGGAACATTGGCTGCATCTGCTATTTCATCTGGAGTAATTCACAAGgtgtggttcatactttcatttttctttttctctgggaaaaatttaaatgaagttccacttgttattggcatagttaggatacttttcaattgttgcaact---
|| ||||| ||||| ||||| |||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | || ||||||||| | | | |||| | | || | || | | | || || | || |||| | | ||| ||
TGTTATGGAATATTTTTATGATCGTGGGTACCTTTCAATTTTGTGGGAATGCGGAGGAACATTGGCTGCATCTGCTATTTCATCTGGCATCATACACAAGgtgcttgttagttatgaatttatatcaaatgtgtcgacagggttgttcattctcttgttaaattttagc-caatt--gataaggaaaagtcattgaaaggtttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17519626|gb|BM188668.1|BM188668EST: GCGGAGGAACATTGGCTGCATCTGCTATTTCATCTGGAGTAATTCACAAG GTTTATGCTTTTGTTGCTCCTAAAATTATTGGTGGAAAGAATGCACCATCT
genomic: GCGGAGGAACATTGGCTGCATCTGCTATTTCATCTGGAGTAATTCACAAGgtgtggttca ... tgcattccagGTTTATGCTTTTGTTGCTCCTAAAATTATTGGTGGAAAGAATGCACCATCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGTAATGGAGTATTTCCATGATTGTGGATATCTTTCAATTTTATGGGAATGCGGAGGAACATTGGCTGCATCTGCTATTTCATCTGGAGTAATTCACAAGgtgtggttcatactttcatttttctttttctctgggaaaaatttaaatgaagttccacttgttattggcatagttaggatacttttcaattgttgcaact
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaaat