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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGAGACAAAGTAAAGAAGGGGCAAGTTGTATGCATCATTGAGGCAATGAAATTGATGAATGAAATAGAAgtaagttcaaaggttttatattgatttttattggtaactgttgattaaaacagtggattctacatgtcatgcctttatgtggtgcacttatttgttgcat...

Basic information

species Glycine max
transcript GLYMA09G38440.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G38440.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0023g00760.t01 (Vitis vinifera), 5'ss of exon 5
GTTGGAGACAAAGTAAAGAAGGGGCAAGTTGTATGCATCATTGAGGCAATGAAATTGATGAATGAAATAGAAgtaagttcaaaggttttatattgatttttattggtaactgttgattaaaacagtggattctacatgtcatgcctttatgtggtgcacttatttgttgcat----
||||| ||||||||| |||| ||  ||||  | |||||||||||||| ||||||||||||||||| |||||||||||        | || | ||   || |     ||| | |    |  ||||||  |   |  | ||  | | | |||       | |  |||| |  ||    
GTTGGGGACAAAGTACAGAAAGGAAAAGTCTTGTGCATCATTGAGGCCATGAAATTGATGAATGAGATAGAAgtaaggct---tttcttttcttctcttctccatctaattatgtgctgcaacagtccacatttaaagttttacttctatacaagataatc-tttgctttattcaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16277267|gb|BI942292.1|BI942292
EST:     GGCAAGTTGTATGCATCATTGAGGCAATGAAATTGATGAATGAAATAGAA                         GCTGATCAGTCAGGAACTATAGTTGAAATTGTTGCGGAAGATGCCAAATCT
genomic: GGCAAGTTGTATGCATCATTGAGGCAATGAAATTGATGAATGAAATAGAAgtaagttcaa ... tactatacagGCTGATCAGTCAGGAACTATAGTTGAAATTGTTGCGGAAGATGCCAAATCT