1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AGCTGATGACAAGTGTAGTACAGAGGTTGCACTAGCAGGAGGTGTACATGCTCTAGTGATGCTTGCTCGTAACTGCAAATTTGAGGGAGTGCAAGAGCAGgtagcattactttttattatttgggtaccatccagttcagttgctaaaatctttgaagctgttttatttggtagatgatacctgccaattgaatgttgga...
species | Glycine max |
transcript | GLYMA09G37720.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTCTAGTGATGCTTGCTCGTAACTGCAAATTTGAGGGAGTGCAAGAGCAG GCTGCTCGGGCATTGGCTAACTTAGCTGCCCATGGAGATAGTAACAGTAACEST: gi|209716858|gb|BW679610.1|BW679610
genomic: CTCTAGTGATGCTTGCTCGTAACTGCAAATTTGAGGGAGTGCAAGAGCAGgtagcattac ... taaacatcagGCTGCTCGGGCATTGGCTAACTTAGCTGCCCATGGAGATAGTAACAGTAAC
EST: CTCTAGTGATGCTTGCTCGTAACTGCAAATTTGAGGGAGTGCAAGAGCAG GCTGCTCGGGCATTGGCTAACTTAGCTGCCCATGGAGATAGTAACAGTAACEST: gi|7041810|gb|AW471704.1|AW471704
genomic: CTCTAGTGATGCTTGCTCGTAACTGCAAATTTGAGGGAGTGCAAGAGCAGgtagcattac ... taaacatcagGCTGCTCGGGCATTGGCTAACTTAGCTGCCCATGGAGATAGTAACAGTAAC
EST: CTCTAGTGATGCTTGCTCGTAACTGCAAATTTGAGGGAGTGCAAGAGCAG GCTGCTCGGGCATTGGCTAACTTAGCTGCCCATGGAGATAGTAACAGTAAC
genomic: CTCTAGTGATGCTTGCTCGTAACTGCAAATTTGAGGGAGTGCAAGAGCAGgtagcattac ... taaacatcagGCTGCTCGGGCATTGGCTAACTTAGCTGCCCATGGAGATAGTAACAGTAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTGATGACAAGTGTAGTACAGAGGTTGCACTAGCAGGAGGTGTACATGCTCTAGTGATGCTTGCTCGTAACTGCAAATTTGAGGGAGTGCAAGAGCAGgtagcattactttttattatttgggtaccatccagttcagttgctaaaatctttgaagctgttttatttggtagatgatacctgccaattgaatgttgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG