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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGCTAGTGAGTACACTTGCCAAGTACCGATCAAGACCCAGGGTTTATATTGGTTGCATGAAATCTGGTCCTGTTCTATATCAAAAgtgaggtttctctttgataagtcattcattgttgaaggaattatttatgttcttttgtgaatcaagtaatctcattttaactagtgtgagtggcag

Basic information

species Glycine max
transcript GLYMA09G36830.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G36830.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G33430.1 (Arabidopsis thaliana), 5'ss of exon 5
------------GTATGCTAGTGAGTACACTTGCCAAGTACCGATCAAGACCCAGGGTTTATATTGGTTGCATGAAATCTGGTCCTGTTCTATATCAAAAgtgaggtttctctttgataagtcattcattgttgaaggaattatttatgttcttttgtgaatcaagtaatctcattttaactagtgtgagtggcag
            ||||||| || |  |||||||| |  || | ||||||||| ||| |||| ||||| |||||||| |||||||||||||| |  ||||||| ||  |||| |   | || |     |   ||| |  ||  || |             | | ||||||     |||  |   || |         
ATGTCAATTTAGGTATGCTTGTTACAACACTTGCGAGATATCAATCAAGACCAAGGATTTACATTGGATGCATGAAGTCTGGTCCTGTTCTTTCACAAAAgtaag-cttctttacaaaaaatttgaaacctttggataaaa-atctg-----------aactaaagtaaggatttttggaaatgtatag-------