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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATCAGGCTTTAGCTTTACATGTGATTTGAGTGATAACATTGCTGCGCCCTGGCCTTCTTCATCATCTTCATTTGCATCTATGTCACTCTGTGCACCTGgtatgtgtttggacaaatttgctttctcttgatcgctgcttactttttttattcaggatgttggtattatgatattacaaaatactgtttgcatatgcttaactcttgtctctatttttttttcag

Basic information

species Glycine max
transcript GLYMA09G36130.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G36130.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os10g38980.3 (Oryza sativa), 5'ss of exon 6
---TCATCAGGCTTTAGCTTTACATGTGATTTGAGTGATAACATTGCTGCGCCCTGGCCTTCTTCATCATCTTCATTTGCATCTATGTCACTCTGTGCACCTGgtatgtgtttggacaaatttgctttctcttgatcgctgcttactttttttattcaggatgttggtattatgatattacaaaatactgtttgcatatgcttaactcttgtctctatttttttttcag
    |  | ||| |||| |||||||||||||||||||| |||||||| ||||| ||||| || |||||||||    ||  |||  ||||||| ||||| || |||| | ||   ||||  |  | |||  |   |               ||  | ||  |      |   ||||||   |    |  || || ||                                 
AATGCTACGGGCATTAGTTTTACATGTGATTTGAGTGACAACATTGCAGCGCCATGGCCATCATCATCATCTG---TTCAATCCTTGTCACTTTGTGCTCCAGgtaag-gt---gacatttcaggtttagcactagaaaaaacagtgagcttcgtacaacacaa-attgacatgatacccctcctt--tggtttcag--------------------------------

upper sequence: GLYMA09G36130.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G162251_T02 (Zea mays), 5'ss of exon 5
---TCATCAGGCTTTAGCTTTACATGTGATTTGAGTGATAACATTGCTGCGCCCTGGCCTTCTTCATCATCTTCATTTGCATCTATGTCACTCTGTGCACCTGgtatgtgtttgga--caaatttgctttctcttgatcgctgcttac--tttttttattcaggatgttggtattatgatattacaaaatactgtttgcatatgcttaact---cttgtctctatttttttttcag-----
    |  ||||| ||||||||||||| ||||||||||| || ||||| || || ||||| || ||||| |||    |   |||  ||||||| ||||| || |||| | |   | |  | ||||||  |       |        |||  ||||   | | |  |  |   | | |  || ||  || ||  ||  | |   |  ||  ||   |   |    ||  | ||||        
AACGCTACAGGCATTAGCTTTACATGCGATTTGAGTGACAATATTGCAGCACCATGGCCATCCTCATCTTCTG---TCCAATCATTGTCACTTTGTGCTCCAGgtaagagcaggcattctaatttgggtcacaaaaacaatacactacaattttcgaaataacaacatgattctcactatttt-taacatgttgagtactagtttttgtctaatcacattggcatcctcttttggattcag

upper sequence: GLYMA09G36130.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G30700.1 (Arabidopsis thaliana), 5'ss of exon 6
---TCATCAGGCTTTAGCTTTACATGTGATTTGAGTGATAACATTGCTGCGCCCTGGCCTTCTTCATCATCTTCATTTGCATCTATGTCACTCTGTGCACCTGgtatgtgtttggacaaatttgctttctcttgatcgctgcttactttttttattcaggatgttggtattatgatattacaaaatactgtttgcatatgcttaactcttgtctctatttttttttcag
    |||||||||  |||||||||||||||||||  || ||||||||||| || ||||| |||||||| ||    | |   ||| |||| || ||||| |||||||     ||       |     |||||||  |  ||  ||  |     | | ||| |   |   |   | | ||| ||||| |   ||||| | |   | | ||   | | | ||   | | |||
AACACATCAGGCTACAGCTTTACATGTGATTTGACAGACAACATTGCTGCTCCATGGCCATCTTCATCGTCAATGTCT---TCTTTGTCTCTATGTGCTCCTGgtaatcacttctctctctacctgttctcttc-ttactcattgttggagct-tccagaaaactaaaaagtttaaattgcaaaaaaagttttgc-tttatcttattcaattttattttaaatatgcag

upper sequence: GLYMA09G36130.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv05s0094g00050.t01 (Vitis vinifera), 5'ss of exon 4
---TCATCAGGCTTTAGCTTTACATGTGATTTGAGTGATAACATTGCTGCGCCCTGGCCTTCTTCATCATCTTCATTTGCATCTATGTCACTCTGTGCACCTGgtatgtgtttgg-acaaatttgctttctcttgatcgctgcttactttttttattcaggatgttggtattatgatatta-----caaaatactgtttgcatatgcttaactcttgtctctatttttttttcag-------------------
   ||| ||||||| |||||||| ||||| ||||||||||| ||||| || || ||||||||   |||  | ||| || | ||  |||| || ||||| || ||||  || |||  | | | |   |||   |   |  ||  ||  || || ||||        |    ||||| | ||        || | || |    | | | ||   |    | |  |||| ||  | |                    
AATTCAACAGGCTTCAGCTTTACGTGTGACTTGAGTGATAATATTGCAGCTCCATGGCCTTC---ATCGACCTCAATTTCGTCCTTGTCTCTTTGTGCTCCGGgtaactgattgacaaagaatcatttttgttcatttcctcatttgttgttatattagatcaaataaacttatggtttttatctttgaagtgctatcattacaagtttg-tttcaatgtacatttcttactgatcacttatcaaaatttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207796620|gb|GD770782.1|GD770782
EST:     CTGGCCTTCTTCATCATCTTCATTTGCATCTATGTCACTCTGTGCACCTG                         AGATGTCATTACCTGCTCTCCCAACATCTTCTCAGACAC
genomic: CTGGCCTTCTTCATCATCTTCATTTGCATCTATGTCACTCTGTGCACCTGgtatgtgttt ... tttttttcagAGATGTCATTACCTGCTCTCCCAACATCTTCTCAGACAC
EST: gi|208340213|gb|GE135789.1|GE135789
EST:     CTGGCCTTCTTCATCATCTTCATTTGCATCTATGCCACGCTGTGCACCTG                         AGATGTCATTACCTGCTCTCCCAACATCTTCTCAGACACTAAAAAA
genomic: CTGGCCTTCTTCATCATCTTCATTTGCATCTATGTCACTCTGTGCACCTGgtatgtgttt ... tttttttcagAGATGTCATTACCTGCTCTCCCAACATCTTCTCAGACACTAAAAAA
EST: gi|208303795|gb|GE105264.1|GE105264
EST:     CTGGCCTTCTTCATCATCTTCATTTGCATCTATGTCACTCTGTGCACCTG                         AGATGTCATTACCTGCTCTCCCAACATCTTCTCAGACACTAAAAAGTAATG
genomic: CTGGCCTTCTTCATCATCTTCATTTGCATCTATGTCACTCTGTGCACCTGgtatgtgttt ... tttttttcagAGATGTCATTACCTGCTCTCCCAACATCTTCTCAGACACTAAAAAATAATG
EST: gi|193446954|gb|FK416215.1|FK416215
EST:     CTGGCCTTCTTCATCATCTTCATTTGCATCTATGTCACTCTGTGCACCTG                         AGATGTCATTACCTGCTCTCCCAACATCTTCTCAGACACTAAAAAATA
genomic: CTGGCCTTCTTCATCATCTTCATTTGCATCTATGTCACTCTGTGCACCTGgtatgtgttt ... tttttttcagAGATGTCATTACCTGCTCTCCCAACATCTTCTCAGACACTAAAAAATA
EST: gi|208308615|gb|GE104507.1|GE104507
EST:     CTGGCCTTCTTCATCATCTTCATTTGCATCTATGTCACTCTGTGCACCTG                         AGATGTCATTACCTGCTCTCCCAA
genomic: CTGGCCTTCTTCATCATCTTCATTTGCATCTATGTCACTCTGTGCACCTGgtatgtgttt ... tttttttcagAGATGTCATTACCTGCTCTCCCAA
EST: gi|207696743|gb|GD677004.1|GD677004
EST:     CTGGCCTTCTTCATCATCTTCATTTGCATCTATGTCACTCTGTGCACCTG                         AGATGTCATTACCTGCTCTCCCAACATCTTCTCAGACACTAAAAAATAATG
genomic: CTGGCCTTCTTCATCATCTTCATTTGCATCTATGTCACTCTGTGCACCTGgtatgtgttt ... tttttttcagAGATGTCATTACCTGCTCTCCCAACATCTTCTCAGACACTAAAAAATAATG