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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTAAATCAGCAGATTGGTCTCCCTTTGTTGCTCCATTTTGGCCAGCAGTGATACGCACCGCCCTGACCTGGAATGGCCTCACTTCACTCTTGCGCAGTGgtaagctcatattgaatttcatctcctatctcaagtcttgtactgtcattgtcgttgataattacttccatatacacagtaacttttatatagctaatta...

Basic information

species Glycine max
transcript GLYMA09G35680.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207846706|gb|GD818589.1|GD818589
EST:     ATACGTCACCGCCCTGACCTGGAATGGCCTCACTTCACTCTTGCGCAGTG                         GACTTAAAACCATAAAGGGAGCTTTGGCTATGCCATTGATGAT-AAAGGAT
genomic: ATACG-CACCGCCCTGACCTGGAATGGCCTCACTTCACTCTTGCGCAGTGgtaagctcat ... ttttgtccagGACTTAAAACCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGAT
EST: gi|208028235|gb|GD826844.1|GD826844
EST:     TGGAATGGCCTCACTTCACTCTTGCGCAGTG                         GACTTAAAACCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGAT
genomic: TGGAATGGCCTCACTTCACTCTTGCGCAGTGgtaagctcat ... ttttgtccagGACTTAAAACCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGAT
EST: gi|207733498|gb|GD712750.1|GD712750
EST:     GATACGCACCGCCCTGACCTGGAATGGCCTCACTTCACTCTTGCGCAGTG                         GACTTAAAACCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGAT
genomic: GATACGCACCGCCCTGACCTGGAATGGCCTCACTTCACTCTTGCGCAGTGgtaagctcat ... ttttgtccagGACTTAAAACCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGAT
EST: gi|14008904|gb|BG725508.1|BG725508
EST:     GATACGCACCGCCCTGACCTGGAATGGCCTCACTTCACTCTTGCGCAGTG                         GACTTAAAACCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGAT
genomic: GATACGCACCGCCCTGACCTGGAATGGCCTCACTTCACTCTTGCGCAGTGgtaagctcat ... ttttgtccagGACTTAAAACCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGAT
EST: gi|6069513|gb|AW099184.1|AW099184
EST:     GATACGCACCGCCCTGACCTGGAATGGCCTCACTTCACTCTTGCGCAGTG                         GACTTAAAACCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGAT
genomic: GATACGCACCGCCCTGACCTGGAATGGCCTCACTTCACTCTTGCGCAGTGgtaagctcat ... ttttgtccagGACTTAAAACCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGAT
EST: gi|208124038|gb|GD925528.1|GD925528
EST:     GATACGCACCGCCCTGACCTGGAATGGCCTCACTTCACTCTTGCGCAGTG                         GACTTAAAACCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGAT
genomic: GATACGCACCGCCCTGACCTGGAATGGCCTCACTTCACTCTTGCGCAGTGgtaagctcat ... ttttgtccagGACTTAAAACCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGAT
EST: gi|209718925|gb|BW669114.1|BW669114
EST:     GATACGCACCGCCCTGACCTGGAATGGCCTCACTTCACTCTTGCGCAGTG                         GACTTAAAACCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGAT
genomic: GATACGCACCGCCCTGACCTGGAATGGCCTCACTTCACTCTTGCGCAGTGgtaagctcat ... ttttgtccagGACTTAAAACCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGAT