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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAATGATCCCTTGTGGGTCATGAATGTGGTCTCATCTTATGCTCCCAACACACTTCCTGTGGTTTTTGATCGCGGTCTTATTGGAATCCTCCATGACTGgtaagtttgaatttttcataattcaaaataaggttattatttatgaatgtatttgtgttatatcatatggtatggtatttattttaaattttattatttggtag

Basic information

species Glycine max
transcript GLYMA09G34640.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G34640.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0033g01120.t01 (Vitis vinifera), 5'ss of exon 6
TCAATGATCCCTTGTGGGTCATGAATGTGGTCTCATCTTATGCTCCCAACACACTTCCTGTGGTTTTTGATCGCGGTCTTATTGGAATCCTCCATGACTGgtaagtttgaatttttcataattcaaaataaggttattatttatgaatgtatttgtgttatatcatatggtatggtatttattt-taaattttattatttggtag
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TTAATGATCCGTTGTGGGTCATGAATGTGGTCTCTTCCTACGCTGCTAACACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTGgtaattttcaaagcatttgaatacacatgaaagcttttgggtctgcattaaggcacact---tcttgtgaactttgtttcatttgtttgtttcctgttcttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6070597|gb|AW099984.1|AW099984
EST:     ACACTTCCTGTGGTTTTTGATCGCGGTCTTATTGGAATCCTCCATGACTG                         GTGTGAAGCTTTTTCAACATATCCTCGAACCTATGACCTCCTTCATCTTGA
genomic: ACACTTCCTGTGGTTTTTGATCGCGGTCTTATTGGAATCCTCCATGACTGgtaagtttga ... tatttggtagGTGTGAAGCTTTTTCAACATATCCTCGAACCTATGACCTCCTTCATCTTGA
EST: gi|298182969|gb|HO028232.1|HO028232
EST:     ACACTTCCTGTGGTTTTTGATCGCGGTCTTATTGGAATCCTCCATGACTG                         GTGTGAAGCTTTTTCAACATATCCTCGAACCTATGACCTCCTTCATCTTGA
genomic: ACACTTCCTGTGGTTTTTGATCGCGGTCTTATTGGAATCCTCCATGACTGgtaagtttga ... tatttggtagGTGTGAAGCTTTTTCAACATATCCTCGAACCTATGACCTCCTTCATCTTGA