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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAACAAAGAAGTTTGAAAAGCTAATCACTGATAAGAAGGAAATTGAAGGATTACCTGCCACTGCTCTTGGGTTGGCTGCACAGAGTGCAGTATCCAAGgtatgtcatgttgacatgttttgttatttgctgaaggtatgacaatcagctatgttgagttttgattacttaacgggcacatgcag

Basic information

species Glycine max
transcript GLYMA09G33490.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G33490.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os02g58340.1 (Oryza sativa), 5'ss of exon 5
TGCAACAAAGAAGTTTGAAAAGCTAATCACTGATAAGAAGGAAATTGAAGGATTACCTGCCACTGCTCTTGGGTTGGCTGCACAGAGTGCAGTATCCAAGgtatgtcatgttgacatgttttgttatttgctgaaggtatgacaatcagctatgttgagttttgattac-ttaacgggcacatgcag----
|||||| ||||| ||||| ||  |||| ||||||||||| |||||||| || ||||||||||| || ||||| || || ||||||| ||| |  || ||||||| | |  |  | |       |||||      | |  | | | |   || | ||||   || || ||  | ||  || |||   |    
TGCAACTAAGAAATTTGAGAAATTAATTACTGATAAGAATGAAATTGATGGGTTACCTGCCACAGCACTTGGCTTAGCAGCACAGACTGCCGCGTCAAAGgtatataagct--ataaacaccattatt-----gaagcttaaaagtt--ctctcttga---ttcatcacactgacaagc-cattttgttag

upper sequence: GLYMA09G33490.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0211g00060.t01 (Vitis vinifera), 5'ss of exon 5
TGCAACAAAGAAGTTTGAAAAGCTAATCACTGATAAGAAGGAAATTGAAGGATTACCTGCCACTGCTCTTGGGTTGGCTGCACAGAGTGCAGTATCCAAGgtatgtcatgttgacatgttttgttatttgct-gaaggtatgacaatcagctatgttgagttttgattacttaacgggcacatgcag----------------------------------
||| |||||||| |||| |||  | || ||||||||||| || ||||||||||| ||||| |||||||||||||||||||| || |  ||||| || ||||||| |   | |||  |||      ||||  | |   ||    | ||   ||   |  |||   |     ||  |       | |                                    
TGCCACAAAGAATTTTGGAAAATTGATAACTGATAAGAAAGATATTGAAGGATTGCCTGCTACTGCTCTTGGGTTGGCTGCTCAAACAGCAGTGTCTAAGgtatttttagctgatttgtagctcaatttttttgcttgttaatccatttccttcctcaagtccagtaatattggcaattctcttctcattttttgcttatgctcatctacaatcacttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254348573|gb|GR852252.1|GR852252
EST:     GATTACCTGCCACTGCTCTTGGGTTGGCTGCACAGAGTGCAGTATCCAAG                         GGGCATGAAAATGCCACCGCTGAGAATGGGCCATGGATAATTACATTAGAT
genomic: GATTACCTGCCACTGCTCTTGGGTTGGCTGCACAGAGTGCAGTATCCAAGgtatgtcatg ... gcacatgcagGGGCATGAAAATGCCACCGCTGAGAATGGGCCATGGATAATTACATTAGAT
EST: gi|308098840|gb|HO760681.1|HO760681
EST:     GATTACCTGCCACTGCTCTTGGGTTGGCTGCACAGAGTGCAGTATCCAAG                         GGGCATGAAAATGCCACCGCTGAGAATGGGCCATGGATAATTACATTAGAT
genomic: GATTACCTGCCACTGCTCTTGGGTTGGCTGCACAGAGTGCAGTATCCAAGgtatgtcatg ... gcacatgcagGGGCATGAAAATGCCACCGCTGAGAATGGGCCATGGATAATTACATTAGAT