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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCCCCAAGCTTCAGTGACACCGACATGCCTGCAGTGCCACCTGGCTGGAAAGGCCAATGTCAATCAGGGGAGGGATTCAATGCCTCATCTTGCAACAGgtttgtggctgaaaccttatcctcatctggtttcatttttcacttcacaaaccaaaaatggcatttggaggaaatcatcaagagagatctcaggcataat...

Basic information

species Glycine max
transcript GLYMA09G32760.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G32760.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0044g01970.t01 (Vitis vinifera), 5'ss of exon 5
AATCCCCAAGCTTCAGTGACACCGACATGCCTGCAGTGCCACCTGGCTGGAAAGGCCAATGTCAATCAGGGGAGGGATTCAATGCCTCATCTTGCAACAGgttt-gtggctgaaaccttatcctcatctggtttcatttttcacttcacaa--accaaaaatggcatttggaggaaatcatcaagagagatctcaggcataat
|||||||||| ||||||||   | |||||||| || | ||| |||| ||||| || ||||| |||||||| || | ||| ||||| ||||||||||||||||||  |    | |||     ||| || || |   ||  ||   |  | |   |   | |  || ||    |        | || | | |  |  || |||  
AATCCCCAAGTTTCAGTGATGACAACATGCCTTCAATACCAGCTGGATGGAATGGACAATGCCAATCAGGAGAAGCATTTAATGCATCATCTTGCAACAGgttttataatagtaaca----ccttatttgataagatcatttgatggaaatttattgacagagggatcctcact---cttttaaaaaaaaattatggtatag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207771030|gb|GD744717.1|GD744717
EST:     AAAGGCCAATGTCAATCAGGGGAGGGATTCAATTCCTCATCATGCAACAG                         GAAAGTGATAGGAGCAAGATACTACAGGAGTGGATATGAAGCTGCTG
genomic: AAAGGCCAATGTCAATCAGGGGAGGGATTCAATGCCTCATCTTGCAACAGgtttgtggct ... tataatatagGAAAGTGATAGGAGCAAGATACTACAGGAGTGGATATGAAGCTGCTG
EST: gi|209704059|gb|BW673659.1|BW673659
EST:     AAAGGCCAATGTCAATCAGGGGAGGGATTCAATGCCTCATCTTGCAACAG                         GAAAGTGATAGGAGCAAGATACTACAGGAGTGGATATGAAGCTGCTG
genomic: AAAGGCCAATGTCAATCAGGGGAGGGATTCAATGCCTCATCTTGCAACAGgtttgtggct ... tataatatagGAAAGTGATAGGAGCAAGATACTACAGGAGTGGATATGAAGCTGCTG