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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTATCGTGCTCCTGAGGTTATTTTGGGGCTTCCATATGACAAGAAGATTGACATCTGGTCACTTGGATGCATCTTGGCAGAACTTTGTACTGGCAATgtatgatcaatagatggttaatgttatttatttcaaaatggtataaagtttttcaaaatttagcatgtaaagatttatatgaaatttcccgtgggaagta...

Basic information

species Glycine max
transcript GLYMA09G29970.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G29970.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g51020.1 (Oryza sativa), 5'ss of exon 5
GTCTTATCGTGCTCCTGAGGTTATTTTGGGGCTTCCATATGACAAGAAGATTGACATCTGGTCACTTGGATGCATCTTGGCAGAACTTTGTACTGGCAATgta--tgatcaatagatggttaatgttatttatttcaaaatggtataaagtttttcaaaatttagcatgtaaagatttatatgaaatttcccgtgggaagta-
 ||||| ||||| |||||||||||||||||  | || |||||||| ||||| || || |||||||||||||| ||  | || |||||||| ||||| ||||||  || | | |  ||      | ||    |   |  ||| || ||||   |||||     | || |   |   | | | |||     |  || |    |  
ATCTTACCGTGCACCTGAGGTTATTTTGGGTTTGCCTTATGACAAAAAGATAGATATGTGGTCACTTGGATGTATACTAGCTGAACTTTGCACTGGAAATgtaagtggttactgcataccggttattgc--accacttaattgt-taaatcctttcatctcatggctttctattttctttttgactgaacttgtcgctgtttt

upper sequence: GLYMA09G29970.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G181002_T01 (Zea mays), 5'ss of exon 5
GTCTTATCGTGCTCCTGAGGTTATTTTGGGGCTTCCATATGACAAGAAGATTGACATCTGGTCACTTGGATGCATCTTGGCAGAACTTTGTACTGGCAATgta--tgatcaatagatggttaatgttatttatttcaaaatggtataaagtttttcaaaatttagcat-gtaaagatttatatgaaatttcccgtgggaagta
 ||||| ||||| |||||||||||  ||||  | || |||||||| ||||| || || ||||||||||| || || || ||||||||||| ||||| ||||||  || | | |  ||  |   |  ||||  ||   || || |||     |  | |   ||  |  | ||  |   |  | ||  | |      | | ||  
ATCTTACCGTGCACCTGAGGTTATACTGGGCTTGCCTTATGACAAAAAGATAGATATATGGTCACTTGGTTGTATATTAGCAGAACTTTGCACTGGAAATgtaagtggttactgcatattggctaatatt-gttcataactgttattgctatacttatggttatgtgttgttcatgatgttctggtaatgtaaaggagtag--

upper sequence: GLYMA09G29970.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G17750.1 (Arabidopsis thaliana), 5'ss of exon 6
GTCTTATCGTGCTCCTGAGGTTATTTTGGGGCTTCCATATGACAAGAAGATTGACATCTGGTCACTTGGATGCATCTTGGCAGAACTTTGTACTGGCAATgtatgatcaa---tagatggttaatgttatttatttcaaaatggtataaagtttttcaaaatttagcatgtaaagatttatatgaaatttcccgtgggaagta
 || || |||||||| || || ||| | |||||||||||||| || ||||| || |||||||||||||| ||||| ||||||||||| ||||| ||||||||| | || |   | |||| |    ||||     || | |||  |||||     |     |  ||| |    |  || ||  |    | | |  | | |    
ATCCTACCGTGCTCCAGAAGTCATTCTTGGGCTTCCATATGATAAAAAGATAGATATCTGGTCACTTGGCTGCATTTTGGCAGAACTATGTACCGGCAATgtaagttccagcatcgatgataccagttaaaagctttataattatataatccactaagctagctaggaccctataatgtaacttgcgtctgcttttgcag---

upper sequence: GLYMA09G29970.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 11
GTCTTATCGTGCTCCTGAGGTTATTTTGGGGCTTCCATATGACAAGAAGATTGACATCTGGTCACTTGGATGCATCTTGGCAGAACTTTGTACTGGCAATgtatgatcaatagatggttaatgttatttatttcaaaatggtataaagtttttcaaaatttagcatgtaaagatttatatgaaatttcccgtgggaagta------
||||||||| || || ||||| ||||||||||||||||||||||| ||||| ||  ||||||||||||| || |||||||| |||||||| |||||||||||| |  |  ||  |  |   |||| ||| |   | |    ||| || | |  |||    | |  |||     ||| | |    |||   |  | || ||      
GTCTTATCGAGCACCAGAGGTCATTTTGGGGCTTCCATATGACAAAAAGATAGATGTCTGGTCACTTGGTTGTATCTTGGCTGAACTTTGCACTGGCAATgtaagtactgtatttcatggttgtt-tttctcctaca----tatgaattatggcaagcagtggagtgtttttctttct-tctccttttttggagaaaataggtagg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17963708|gb|BM270454.1|BM270454
EST:     TTGACATCTGGTCACTTGGATGCATCTTGGCAGAACTTTGTACTGGCAAT                         GTTCTCTTCCAAAATGATTCCCCTGCGACATTACTTGCTCGGGTGATTGGG
genomic: TTGACATCTGGTCACTTGGATGCATCTTGGCAGAACTTTGTACTGGCAATgtatgatcaa ... atttatgtagGTTCTCTTCCAAAATGATTCCCCTGCGACATTACTTGCTCGGGTGATTGGG
EST: gi|151404434|gb|EV274248.1|EV274248
EST:     TTGACATCTGGTCACTTGGATGCATCTTGGCAGAACTTTGTACTGGCAAT                         GTTCTCTTCCAAAATGATTCCCCTGCGACATTACTTGCTCGGGTGATTGGG
genomic: TTGACATCTGGTCACTTGGATGCATCTTGGCAGAACTTTGTACTGGCAATgtatgatcaa ... atttatgtagGTTCTCTTCCAAAATGATTCCCCTGCGACATTACTTGCTCGGGTGATTGGG