Sequence
atgc intronic sequence ATGC exonic sequenceGCATTAAATGGGTACTTTGATTGTGTACAACTGCTACTTGATCTTAGTGCTAATGTGTCAGCTGCAACATTTCATTATGGAACATCAATGGATTTAATAGgtaatcttttgtttaatttgctgacaaatgtatggttgttttcctttcttcttgaaaattactgatgtgcattgatatag
Basic information
species | Glycine max |
transcript | GLYMA09G26560.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G26560.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G07270.1 (Arabidopsis thaliana), 5'ss of exon 5
GCATTAAATGGGTACTTTGATTGTGTACAACTGCTACTTGATCTTAGTGCTAATGTGTCAGCTGCAACATTTCATTATGGAACATCAATGGATTTAATAGgt---aatcttttgtttaa-------tttgctgacaaatgtatggttgttttcctttcttcttgaaaattac--tgatgtgcattgatatag---
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GCCTTGAATGGATTATTTGATTGTGTGCAGCTTTTGCTTGATCTTGAGGCCAATGTTTCCGCTGTGACATTTCATTATGGAACATCAATGGATATGATTGgtctcagctttctatccgccttcttttttattgactaaaggattctttctatactgctcccaagatgacaatcttgttcttcgttaacgttgcag
upper sequence: GLYMA09G26560.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv16s0100g00690.t01 (Vitis vinifera), 5'ss of exon 6
GCATTAAATGGGTACTTTGATTGTGTACAACTGCTACTTGATCTTAGTGCTAATGTGTCAGCTGCAACATTTCATTATGGAACATCAATGGATTTAATAGgtaatct-tttgtttaatttgc-tgacaaatgtatggttgttttcctttcttcttgaaaattactgatgtgcattgatatag-------------------------------------------------------------------
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GCATTGAATGGGTATTTTGATTGTGTACAGCTCCTACTTGATATCCATGCAAACGTGTCAGCTGTGACTTTTCACTATGGGACGTCAATGGATCTAATAGgtatgctgtttctttattctgaacagcttttatatatttatttatttattgtatttctttttctttttcttcctttttttcattgctggtcattttctgatctcaactgctacaatatatatatgtatgtacatttatttcttctgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6070557|gb|AW099944.1|AW099944EST: TAATGTGTCAGCTGCAACATATCATTATGGAACATCAATGGATTTAATAG GTGCTGGAAGCACTCCATTGCATTATGCTGCTTGTGGAGGCAATTTA
genomic: TAATGTGTCAGCTGCAACATTTCATTATGGAACATCAATGGATTTAATAGgtaatctttt ... attgatatagGTGCTGGAAGCACTCCATTGCATTATGCTGCTTGTGGAGGCAATTTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCATTAAATGGGTACTTTGATTGTGTACAACTGCTACTTGATCTTAGTGCTAATGTGTCAGCTGCAACATTTCATTATGGAACATCAATGGATTTAATAGgtaatcttttgtttaatttgctgacaaatgtatggttgttttcctttcttcttgaaaattactgatgtgcattgatatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC