1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTTGAATTTAACAAGGCTGCACAGTCTTTGACGGAGGCTACAATTCCAACCACTCAGAAGAAAACTGCCTTGAATCGGCTGGTTAAGgtggctattttaccaaagattacatttcactttctattttcagaaaggaaaaaacaaatggttgtcttgtgtaactgttacttacgaagttttctttgtatttag
species | Glycine max |
transcript | GLYMA09G15980.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTACAATTCCAACCACTCAGAAGAAAACTGCCTTGAATCGGCTGGTTAAG GATAATGTTGCACTAATAGTGGTTCTAGAAGCAAAAGTTAACAATCAGCCAEST: gi|207762397|gb|GD731634.1|GD731634
genomic: CTACAATTCCAACCACTCAGAAGAAAACTGCCTTGAATCGGCTGGTTAAGgtggctattt ... ttgtatttagGATAATGTTGCACTAATAGTGGTTCTAGAAGCAAAAGTTAACAATCAGCCA
EST: CTACAATTCCAACCACTCAGAAGAAAACTGCCTTGAATCGGCTGGTTAAG GATAATGTTGCACTAATAGTGGTTCTAGAAGCAAAAGTTAACAATCAGCCAEST: gi|27426055|gb|CA937575.1|CA937575
genomic: CTACAATTCCAACCACTCAGAAGAAAACTGCCTTGAATCGGCTGGTTAAGgtggctattt ... ttgtatttagGATAATGTTGCACTAATAGTGGTTCTAGAAGCAAAAGTTAACAATCAGCCA
EST: CTACAATTCCAACCACTCAGAAGAAAACTGCCTTGAATCGGCTGGTTAAG GATAATGTTGCACTAATAGTGGTTCTAGAAGCAAAAGTTAACAATCAGCCA
genomic: CTACAATTCCAACCACTCAGAAGAAAACTGCCTTGAATCGGCTGGTTAAGgtggctattt ... ttgtatttagGATAATGTTGCACTAATAGTGGTTCTAGAAGCAAAAGTTAACAATCAGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGAATTTAACAAGGCTGCACAGTCTTTGACGGAGGCTACAATTCCAACCACTCAGAAGAAAACTGCCTTGAATCGGCTGGTTAAGgtggctattttaccaaagattacatttcactttctattttcagaaaggaaaaaacaaatggttgtcttgtgtaactgttacttacgaagttttctttgtatttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA