1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ATCCACAGCATTACTTTTTGGCACAATCCTTGGTCTCCTTCAAGCAACAACCCTTATATTTGCTGCAAAACCTCTATTAGCTGCAATGGGTCTAAAACCTgtatgtatctttattatcaagagtatatgttatgttatattaacatatcttcaatatctagagtgcatttatcttatcttttatactaaagtggagctatttttccttgtgtag
species | Glycine max |
transcript | GLYMA09G15550.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCCTTATATTTGCTGCAAAACCTCTATTAGCTGCAATGGGTCTAAAACCT GATTCTCCTATGCTAAACCCTGCTATTAAATACTTGAGATTGAGATCATTAEST: gi|207824037|gb|GD796658.1|GD796658
genomic: CCCTTATATTTGCTGCAAAACCTCTATTAGCTGCAATGGGTCTAAAACCTgtatgtatct ... ccttgtgtagGATTCTCCTATGCTAAACCCTGCTATTAAATACTTGAGATTGAGATCATTA
EST: CCCTTATATTTGCTGCAAAACCTCTATTAGCTGCAATGGGTCTAAAACCT GATTCTCCTATAGACTAAACCCTGCTATTAAAEST: gi|208311044|gb|GE104696.1|GE104696
genomic: CCCTTATATTTGCTGCAAAACCTCTATTAGCTGCAATGGGTCTAAAACCTgtatgtatct ... ccttgtgtagGATTCTCCTAT-G-CTAAACCCTGCTATTAAA
EST: CCCTTATATTTGCTGCAAAACCTCTATTAGCTGCAATGGGTCTAAAACCT GATTCTCCTATGCTAAACCCTGCTATTAAATACTTGAGATTGAGATCATTA
genomic: CCCTTATATTTGCTGCAAAACCTCTATTAGCTGCAATGGGTCTAAAACCTgtatgtatct ... ccttgtgtagGATTCTCCTATGCTAAACCCTGCTATTAAATACTTGAGATTGAGATCATTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCCACAGCATTACTTTTTGGCACAATCCTTGGTCTCCTTCAAGCAACAACCCTTATATTTGCTGCAAAACCTCTATTAGCTGCAATGGGTCTAAAACCTgtatgtatctttattatcaagagtatatgttatgttatattaacatatcttcaatatctagagtgcatttatcttatcttttatactaaagtggagctatttttccttgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC