1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACAGACAAGGCATCCATGCTAGATGAGATCATCGATTACGTGAAGTTCCTGCAGCTCCAAGTCAAGgtgcgcatcccgcgtttttctcttgtactagcatttctttatttgattttgttcctcatcagcatcaattaatagcatattttaattaccccagttgatt...
species | Glycine max |
transcript | GLYMA09G14380.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGCTAGATGAGATCATCGATTACGTGAAGTTCCTGCAGCTCCAAGTCAAG GTTCTGAGCATGAGCAGACTGGGCGGTGCAGCTGCTGTCGCTCCCCTTGTTEST: gi|19052729|gb|BM731396.1|BM731396
genomic: TGCTAGATGAGATCATCGATTACGTGAAGTTCCTGCAGCTCCAAGTCAAGgtgcgcatcc ... tgggttacagGTTCTGAGCATGAGCAGACTGGGCGGTGCAGCTGCTGTCGCTCCCCTTGTT
EST: TGCTAGATGAGATCATCGATTACGTGAAGTTCCTGCAGCTCCAAGTCAAG GTTCTGAGCATGAGCAGACTGGGCGGTGCAGCTGCTGTCGCTCCCCTTGTTEST: gi|14990392|gb|BI316065.1|BI316065
genomic: TGCTAGATGAGATCATCGATTACGTGAAGTTCCTGCAGCTCCAAGTCAAGgtgcgcatcc ... tgggttacagGTTCTGAGCATGAGCAGACTGGGCGGTGCAGCTGCTGTCGCTCCCCTTGTT
EST: TGCTAGATGAGATCATCGATTACGTGAAGTTCCTGCAGCTCCAAGTCAAG GTTCTGAGCATGAGCAGACTGGGCGGTGCAGCTGCTGTCGCTCCCCTTGTT
genomic: TGCTAGATGAGATCATCGATTACGTGAAGTTCCTGCAGCTCCAAGTCAAGgtgcgcatcc ... tgggttacagGTTCTGAGCATGAGCAGACTGGGCGGTGCAGCTGCTGTCGCTCCCCTTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAGACAAGGCATCCATGCTAGATGAGATCATCGATTACGTGAAGTTCCTGCAGCTCCAAGTCAAGgtgcgcatcccgcgtttttctcttgtactagcatttctttatttgattttgttcctcatcagcatcaattaatagcatattttaattaccccagttgatt
- - - - - - - - - - - - GAGATC
- - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC