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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAATAGCGGACAAAATACCAATGGGTGTCAGgtaactttctagtggtcacattctcacttacttccttttcctttccattttctcagtggtaatgttaaattggtaatactcttttcctattgatgaatcttctcttcttgcttgcag

Basic information

species Glycine max
transcript GLYMA09G11960.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6719223|gb|AW306870.1|AW306870
EST:     GCAAATAGCGGACAAAATACCAATGGCTGTCAG                         TTCTTTATAACATGTGCAAAATGTGACTGGCTTGACAACAAGCATGTTGTC
genomic: GCAAATAGCGGACAAAATACCAATGGGTGTCAGgtaactttct ... ttgcttgcagTTCTTTATAACATGTGCAAAATGTGACTGGCTTGACAACAAGCATGTTGTC
EST: gi|151409781|gb|EV279589.1|EV279589
EST:     GCAAATAGCGGACAAAATACCAATGGGTGTCAG                         TTCTTTATAACATGTGCAAAATGTGACTGGCTTGACAACAAGCATGTTGTC
genomic: GCAAATAGCGGACAAAATACCAATGGGTGTCAGgtaactttct ... ttgcttgcagTTCTTTATAACATGTGCAAAATGTGACTGGCTTGACAACAAGCATGTTGTC
EST: gi|192325817|gb|FK018039.1|FK018039
EST:     GCAAATAGCGGACAAAATACCAATGGCTGTCAG                         TTCTTTATAACATGTGCAAAATGTGACTGGCTTGACAACAAGCATGTTGTC
genomic: GCAAATAGCGGACAAAATACCAATGGGTGTCAGgtaactttct ... ttgcttgcagTTCTTTATAACATGTGCAAAATGTGACTGGCTTGACAACAAGCATGTTGTC
EST: gi|298167097|gb|HO010536.1|HO010536
EST:     GCAAATAGCGGACAAAATACCAATGGCTGTCAG                         TTCTTTATAACATGTGCAAAATGTGACTGGC
genomic: GCAAATAGCGGACAAAATACCAATGGGTGTCAGgtaactttct ... ttgcttgcagTTCTTTATAACATGTGCAAAATGTGACTGGC
EST: gi|15286510|gb|BI470401.1|BI470401
EST:     GCAAATAGCGGACAAAATACCAATGGCTGTCAG                         TTCTTTATAACATGTGCAAAATGTGACTGGCTTGACAACAAGCATGTTGTC
genomic: GCAAATAGCGGACAAAATACCAATGGGTGTCAGgtaactttct ... ttgcttgcagTTCTTTATAACATGTGCAAAATGTGACTGGCTTGACAACAAGCATGTTGTC
EST: gi|298172912|gb|HO019896.1|HO019896
EST:     GCAAATAGCGGACAAAATACCAATGGGTGTCAG                         TTCTTTATAACATGTGCAAAATGTGACTGGCTTGACAACAAGCATGTTG
genomic: GCAAATAGCGGACAAAATACCAATGGGTGTCAGgtaactttct ... ttgcttgcagTTCTTTATAACATGTGCAAAATGTGACTGGCTTGACAACAAGCATGTTG
EST: gi|193693132|gb|FK633737.1|FK633737
EST:     GCAAATAGCGGACAAAATACCAATGGCTGTCAG                         TTCTTTATAACATGTGCAAAATGTGACTGGCTTGACAACAAGCATGTTGTC
genomic: GCAAATAGCGGACAAAATACCAATGGGTGTCAGgtaactttct ... ttgcttgcagTTCTTTATAACATGTGCAAAATGTGACTGGCTTGACAACAAGCATGTTGTC
EST: gi|15814116|gb|BI786391.1|BI786391
EST:     GCAAATAGCGGACAAAATACCAATGGCTGTCAG                         TTCTTTATAACATGTGCAAAATGTGACTGGCTTGACAACAAGCATGTTGTC
genomic: GCAAATAGCGGACAAAATACCAATGGGTGTCAGgtaactttct ... ttgcttgcagTTCTTTATAACATGTGCAAAATGTGACTGGCTTGACAACAAGCATGTTGTC
EST: gi|192320580|gb|FK011990.1|FK011990
EST:     GCAAATAGCGGACAAAATACCAATGGCTGTCAG                         TTCTTTATAACATGTGCAAAATGTGACTGGCTTGACAACAAGCATGTTGTC
genomic: GCAAATAGCGGACAAAATACCAATGGGTGTCAGgtaactttct ... ttgcttgcagTTCTTTATAACATGTGCAAAATGTGACTGGCTTGACAACAAGCATGTTGTC
EST: gi|298182560|gb|HO031295.1|HO031295
EST:     GCAAATAGCGGACAAAATACCAATGGCTGTCAG                         TTCTTTATAACATGTGCAAAATGTGACTGGCTTGACAACAAGCATGTTGTC
genomic: GCAAATAGCGGACAAAATACCAATGGGTGTCAGgtaactttct ... ttgcttgcagTTCTTTATAACATGTGCAAAATGTGACTGGCTTGACAACAAGCATGTTGTC
EST: gi|17023477|gb|BM094511.1|BM094511
EST:     GCAAATAGCGGACAAAATACCAATGGCTGTCAG                         TTCTTTATAACATGTGCAAAATGTGACTGGCTTGACAACAAGCATGTTGTC
genomic: GCAAATAGCGGACAAAATACCAATGGGTGTCAGgtaactttct ... ttgcttgcagTTCTTTATAACATGTGCAAAATGTGACTGGCTTGACAACAAGCATGTTGTC
EST: gi|208125827|gb|GD922033.1|GD922033
EST:     GCAAATAGCGGACAAAATACCAATGGGTGTCAG                         TTCTTTATAACATGTGCAAAATGTGACTGGCTTGACAACAAGCATGTTGCC
genomic: GCAAATAGCGGACAAAATACCAATGGGTGTCAGgtaactttct ... ttgcttgcagTTCTTTATAACATGTGCAAAATGTGACTGGCTTGACAACAAGCATGTTGTC
EST: gi|298188736|gb|HO035429.1|HO035429
EST:     GCAAATAGCGGACAAAATACCAATGGGTGTCAG                         TTCTTTATAACATGTGCAAAATGTGACTGGCTTGACAACAAGCATGTTGTC
genomic: GCAAATAGCGGACAAAATACCAATGGGTGTCAGgtaactttct ... ttgcttgcagTTCTTTATAACATGTGCAAAATGTGACTGGCTTGACAACAAGCATGTTGTC
EST: gi|10847406|gb|BF070093.1|BF070093
EST:     GCAAATAGCGGACAAAATACCAATGGCTGTCAG                         TTCTTTATAACATGTGCAAAATGTGACTGGCT
genomic: GCAAATAGCGGACAAAATACCAATGGGTGTCAGgtaactttct ... ttgcttgcagTTCTTTATAACATGTGCAAAATGTGACTGGCT