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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATACAGAGACTAATCAAGTTGCAAAATTCTGCAATGCGTTCATATCAAGAGTACAAAATTCCAACTGCTTGGATGCTTGATTCAGGAATCATGACCAAGgtatctttattatgccttctttgtggatgtgataacaataatgatacttagtagaccttgcctttctaataagaattagaatttatgtttcaatgacatt...

Basic information

species Glycine max
transcript GLYMA09G09350.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G09350.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv05s0020g00920.t01 (Vitis vinifera), 5'ss of exon 6
CATACAGAGACTAATCAAGTTGCAAAATTCTGCAATGCGTTCATATCAAGAGTACAAAATTCCAACTGCTTGGATGCTTGATTCAGGAATCATGACCAAGgtatctttattatgccttctttgtggatgtgataacaataatgatacttagtagaccttgcctttctaataagaatt-agaatttatgtttcaatgacatt
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CATACAAAGGTTGATTAAGCTGCGGAACTCTGTTGTGCGGTCTTATCAGGAATGTGGAATTCCAACTGGTTGGATGCTTGATTCAGGAATAGTTAGTAAGgtatgttcatgaattttatcttctttttagggtt-cagttatgaatgttaggtatctatgcttaatgtgtaaggttttagtgatgagatgtgaaaggtaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5126618|gb|AI748354.1|AI748354
EST:     TGCTTGATTCAGGAATCATGACCAAG                         ATAAAGCAGGCTTCTATGATTCTGGTCAAGATGTATATGAAAAGAGTGACA
genomic: TGCTTGATTCAGGAATCATGACCAAGgtatctttat ... atgtttgcagATAAAGCAGGCTTCTATGATTCTGGTCAAGATGTATATGAAAAGAGTGACA
EST: gi|6094724|gb|AW119388.1|AW119388
EST:     TGCTTGATTCAGGAATCATGACCAAG                         ATAAAGCAGGCTTCTATGATTCTGGTCAAGATGTATATGAAAAGAGTGACA
genomic: TGCTTGATTCAGGAATCATGACCAAGgtatctttat ... atgtttgcagATAAAGCAGGCTTCTATGATTCTGGTCAAGATGTATATGAAAAGAGTGACA
EST: gi|192328412|gb|FK020123.1|FK020123
EST:     AGTACAAAATTCCAACTGCTTGGATGCTTGATTCAGGAATCATGACCAAG                         ATAAAGCAGGCTTCTATGATTCTGGTCAAGATGTATATGAAAAGAGTGACA
genomic: AGTACAAAATTCCAACTGCTTGGATGCTTGATTCAGGAATCATGACCAAGgtatctttat ... atgtttgcagATAAAGCAGGCTTCTATGATTCTGGTCAAGATGTATATGAAAAGAGTGACA