Sequence
atgc intronic sequence ATGC exonic sequenceCAAGTACTTCGTTGAGTACATTGCCAAAGCTTATCAAGCTCTTACAGATCCAACAGCTCGTGAAAATTATGAAAAATATGGCCATCCTGATGGCAGGCAGgtaataaaacagacgactatgaaaaaatgccaagtggcctgttatctttttgttttcatgctgttgaaatatgcatgatattttattgtag
Basic information
species | Glycine max |
transcript | GLYMA09G08830.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G08830.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G167868_T01 (Zea mays), 5'ss of exon 4
CAAGTACTTCGTTGAGTACATTGCCAAAGCTTATCAAGCTCTTACAGATCCAACAGCTCGTGAAAATTATGAAAAATATGGCCATCCTGATGGCAGGCAGgtaataaaacagacgactatgaaaaaatgcca-agtggcctgttatctttttgttttcatgctgt-tgaaatatgcatgatattttattgtag------------------
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TAAGTACTTTGTTGAATATATATCCAAGGCATATCAAGCATTAACTGATCCTATATCTCGAGAGAATTATGAAAAATATGGTCACCCTGATGGGCGGCAGgtaatatta-gcatcattagatcctaatgtctcaatgaaatctaaattttacaacgtcatatttcatgaacagctaaagctaacaggctatacatcttgtttatgattcag
upper sequence: GLYMA09G08830.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G007871_T02 (Zea mays), 5'ss of exon 4
CAAGTACTTCGTTGAGTACATTGCCAAAGCTTATCAAGCTCTTACAGATCCAACAGCTCGTGAAAATTATGAAAAATATGGCCATCCTGATGGCAGGCAGgtaataa-aacagacgactatgaaaaaatgccaagtggcctgttatctttttgt-----tttcatg--ctgttgaa----atatgcatgatattttattgtag------
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TAAATACTTCATTGAATATATATCCAAGGCATATCAAGCATTAACTGATCCTATATCTCGTGAGAATTATGAGAAATATGGTCACCCTGATGGGCGGCAGgtaatattagcatcattagatcctaatgtctcaatcagagctaaattttgcaacacatgttccatgaactgctaaagctaacgggtaatacatcttgtttatgattcag
upper sequence: GLYMA09G08830.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv16s0050g01460.t01 (Vitis vinifera), 5'ss of exon 4
CAAGTACTTCGTTGAGTACATTGCCAAAGCTTATCAAGCTCTTACAGATCCAACAGCTCGTGAAAATTATGAAAAATATGGCCATCCTGATGGCAGGCAGgtaataaaacagacgactatgaaaaaatgcca--------agtggcctg------------ttatctttttgttttcatgctgttgaaat---atgcatgatattttattgtag
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CAAATATTTTGTGGAGTTCATATCTAAGGCTTATCAGGCTCTCACAGATCCAATCTCACGTGAGAATTATGAAAAGTATGGCCATCCTGATGGTAGGCAGgtaatgaatttccctatgataaggaaggacttgctttgatatttacctaaaaataaagaaactatttataagaaatcatgtttctgaaactgaatgtactatctgttgatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193499753|gb|FK462206.1|FK462206EST: CAACAGCTCGTGAAAATTATGAAAA-TATGGCCATCCTGATGGCAGGCAG GGATTCCAAATGGGTATAGCTCTTCCTCAATTCCTGCTAAATATTGAT
genomic: CAACAGCTCGTGAAAATTATGAAAAATATGGCCATCCTGATGGCAGGCAGgtaataaaac ... tttattgtagGGATTCCAAATGGGTATAGCTCTTCCTCAATTCCTGCTAAATATTGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAAGTACTTCGTTGAGTACATTGCCAAAGCTTATCAAGCTCTTACAGATCCAACAGCTCGTGAAAATTATGAAAAATATGGCCATCCTGATGGCAGGCAGgtaataaaacagacgactatgaaaaaatgccaagtggcctgttatctttttgttttcatgctgttgaaatatgcatgatattttattgtag
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