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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTCCAATTATTTCATGTATTATTGATGGTACGCTGGACTATGATAAGACTAGTCCTCCATTTGCTTCTTTCATTTCTTTAGTCTGCCCAAAAAATGAGgtataatcccttggcttatattttgattcttttttgtacataattcaaattcatataaaaataagtttctagtttgagaaacgcaattacaaattatcac...

Basic information

species Glycine max
transcript GLYMA09G07240.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G07240.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0157g00020.t01 (Vitis vinifera), 5'ss of exon 6
GCTTCCAATTATTTCATGTATTATTGATGGTACGCTGGACTATGATAAGACTAGTCCTCCATTTGCTTCTTTCATTTCTTTAGTCTGCCCAAAAAATGAGgtataatcccttggctt--------atattttgatt------cttttttgtacataattcaaa-----------ttcatataaaaata-agtttctagtttgagaaacgcaattacaaattatcac-------------------------------------------------
 |||||||||||||| ||||| ||||||||||| ||||  ||||||| |  || |||||| ||||| ||||||||||| || ||||||||||  |  |||||||       |||| |        | ||||   ||      ||||    ||  |   |||             ||| | | ||| |  |||||   |||| ||||||  | || | |||| | |                                                  
TCTTCCAATTATTTCGTGTATCATTGATGGTACACTGGTGTATGATAGGTGTACTCCTCCTTTTGCCTCTTTCATTTCCTTGGTCTGCCCAAGCAGCGAGgtatgtcgtgctggcatgactgaacaaatttgagttgctctgctttcaaatatcttgctcatgctattttttctttcttgttaaactgtagttttgggttttagaaactta-ttcccaattcttatgtgattgatgagtggacaagagatcgtgatacatttttctaaattgcag