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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGATACTGGTTTTCAGAACAAAAGTACAGCGGTTGTTTCAGCCTCTGGTTCATCTGAAAGgttcaggctttctcttcatgctttttattgtttaaaaagattccgagatagatgatttgtgacttgtagctgtccttgttgcatatatttttctaagagcgtaatggtcatttgttggttctgtacactaattgtgatattgtatttagttttgactgaactgctatgatttctacattacag

Basic information

species Glycine max
transcript GLYMA09G04910.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213619621|gb|DB965567.1|DB965567
EST:     TTTCAGAACAAAAGTACAGCGGTTGTTTCAGCCTCTGGTTCATCTGAAAG                         AAATTTATCAACATCTGCTTTGATG
genomic: TTTCAGAACAAAAGTACAGCGGTTGTTTCAGCCTCTGGTTCATCTGAAAGgttcaggctt ... tacattacagAAATTTATCAACATCTGCTTTGATG
EST: gi|192331343|gb|FK019632.1|FK019632
EST:     TTTCAGAACAAAAGTACAGCGGTTGTTTCAGCCTCTGGTTCATCTGAAAG                         AAATTTATCAACATCTGCTTTGATGGAAAGAATGCCAAGTAAATGGCCACG
genomic: TTTCAGAACAAAAGTACAGCGGTTGTTTCAGCCTCTGGTTCATCTGAAAGgttcaggctt ... tacattacagAAATTTATCAACATCTGCTTTGATGGAAAGAATGCCAAGTAAATGGCCACG
EST: gi|19934922|gb|BQ079952.1|BQ079952
EST:     TTTCAGAACAAAAGTACAGCGGTTGTTTCAGCCTCTGGTTCATCTGAAAG                         AAATTTATCAACATCTGCTTTGATGGAAAGAATGCCAAGTAAATGGCCA
genomic: TTTCAGAACAAAAGTACAGCGGTTGTTTCAGCCTCTGGTTCATCTGAAAGgttcaggctt ... tacattacagAAATTTATCAACATCTGCTTTGATGGAAAGAATGCCAAGTAAATGGCCA
EST: gi|8827691|gb|BE211421.1|BE211421
EST:     TNTCANAACAAAAGTACAGCGGTTGTTTCAGCCTCTGGTTCATCTGAAAG                         AAATNTATCAACATCTGCTTTGATGGAAAGAATGCCAAGTAAATGGCCACG
genomic: TTTCAGAACAAAAGTACAGCGGTTGTTTCAGCCTCTGGTTCATCTGAAAGgttcaggctt ... tacattacagAAATTTATCAACATCTGCTTTGATGGAAAGAATGCCAAGTAAATGGCCACG
EST: gi|193496805|gb|FK460767.1|FK460767
EST:     TTTCAGAACAAAAGTACAGCGGTTGTTTCAGCCTCTGGTTCATCTGAAAG                         AAATTTATCAACATCTGCTTTGATGGAAAGAATGCCAAGTAAATGGCCACG
genomic: TTTCAGAACAAAAGTACAGCGGTTGTTTCAGCCTCTGGTTCATCTGAAAGgttcaggctt ... tacattacagAAATTTATCAACATCTGCTTTGATGGAAAGAATGCCAAGTAAATGGCCACG
EST: gi|209725601|gb|BW657981.1|BW657981
EST:     TTTCAGAACAAAAGTACAGCGGTTGTTTCAGCCTCTGGTTCATCTGAAAG                         AAATTTATCAACATCTGCTTTGATGGAAAGAATGCCAAGTAGATGGCCACG
genomic: TTTCAGAACAAAAGTACAGCGGTTGTTTCAGCCTCTGGTTCATCTGAAAGgttcaggctt ... tacattacagAAATTTATCAACATCTGCTTTGATGGAAAGAATGCCAAGTAAATGGCCACG