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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGATGTTTGGTCAGTGGGATGCATATTTGCAGAGATGGTAAACAGACGACCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtgaatatctatttcctgatttccatgaattttgcatttctgggtaaatcttaataatatttatcatctatgaatatgtctctagacttttaaatgccat...

Basic information

species Glycine max
transcript GLYMA09G03470.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G03470.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g02680.1 (Oryza sativa), 5'ss of exon 4
TTGATGTTTGGTCAGTGGGATGCATATTTGCAGAGATGGTAAACAGACGACCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtgaatatctatttcctgatttccatgaattttgcatttctgggtaaatcttaataatatttatcatctatgaatatgtctctag--acttttaaatgccat
||||| | |||||||| || || || |||||||| ||||| |||     ||| || |||||||| || ||||||||||||||||||||||| ||||||||||   |||   | | ||||  |       |||||   |  |   |   | ||    |  | ||| || ||||  |     ||| |  |||||| ||      
TTGATATGTGGTCAGTTGGTTGTATCTTTGCAGAAATGGTGAACCAGAAACCACTGTTCCCTGGTGATTCTGAGATTGATGAATTATTTAAGATATTCAGgttc-tattattgtactgagattacctttttttgttctgttaattgtgtttttgccaactctatgatttatgtgttgtgttctggttacttttgaag-----

upper sequence: GLYMA09G03470.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g01850.2 (Oryza sativa), 5'ss of exon 5
TTGATGTTTGGTCAGTGGGATGCATATTTGCAGAGATGGTAAACAGACGACCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtgaatatctatttcctgatttccatgaattttgcatttctgggtaaatcttaataatatttatcatctatg-aatatgtctctag--acttttaaatgccat
||||| | |||||||| || || || |||||||| ||||| |||     ||| || |||||||| || ||||||||||||||||||||||| ||||||||||   |||     | ||||  |       |||||   |  |   |   | ||    |  | | | || ||||   | ||| ||| |  |||||| ||      
TTGATATGTGGTCAGTTGGTTGTATCTTTGCAGAAATGGTGAACCAGAAACCACTGTTCCCTGGTGATTCTGAGATTGATGAATTATTTAAGATATTCAGgttc-tattatcgtactgagattacctttttttgttctgttatttgtgtttttgccaactctctgatttatgtggtgtgt-tctggttacttttgaag-----

upper sequence: GLYMA09G03470.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0045g00310.t01 (Vitis vinifera), 5'ss of exon 6
TTGATGTTTGGTCAGTGGGATGCATATTTGCAGAGATGGTAAACAGACGACCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtgaatatctatttcctgatttccatgaattttgcat----ttctgggtaaatcttaataatatttatcatctatgaatatgtctctagacttttaaatgccat
||||||| ||||| ||||| || |||||||| |||||||| |||   |||||  | || ||||||||||| |||||||||||||| || || || ||||||||  || | || |  |  |||   |    |||  ||    |  ||  || |  || | ||    |    | ||| ||| | ||  |||||||| || |     
TTGATGTGTGGTCTGTGGGCTGTATATTTGCTGAGATGGTGAACCAGCGACCATTGTTTCCTGGGGACTCGGAGATTGATGAATTGTTCAAGATCTTCAGgtgt-taaccatgttgtacttttttttttctttctatagcctcttgattagaagttgaaaagccatgctctttataaat-tttcagtagactttgaagtttg--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120532704|gb|EH260837.1|EH260837
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGNCTGGAGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtgaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGAGTAACTTCATTGCC
EST: gi|192309059|gb|FK001835.1|FK001835
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGAGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtgaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGAGTAACTTCATTGCC
EST: gi|192312501|gb|FK004987.1|FK004987
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAA-TATTCAG                         AATCTTGGGTACCC-AAATGAAGACACATGGCCTG-AGTA-CTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtgaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGAGTAACTTCATTGCC
EST: gi|151396909|gb|EV266782.1|EV266782
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACAT
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtgaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACAT
EST: gi|193425000|gb|FK392123.1|FK392123
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGAGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtgaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGAGTAACTTCATTGCC
EST: gi|208055121|gb|GD851136.1|GD851136
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACGCATGGCCTGGAGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtgaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGAGTAACTTCATTGCC
EST: gi|192295604|gb|FG988178.1|FG988178
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGAGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtgaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGAGTAACTTCATTGCC
EST: gi|9563850|gb|BE473359.1|BE473359
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGAGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtgaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGAGTAACTTCATTGCC
EST: gi|193499843|gb|FK464760.1|FK464760
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGAGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtgaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGAGTAACTTCATTGCC
EST: gi|192330929|gb|FK023102.1|FK023102
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGAGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtgaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGAGTAACTTCATTGCC
EST: gi|192312081|gb|FK003858.1|FK003858
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGAGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtgaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGAGTAACTTCATTGCC
EST: gi|151394972|gb|EV264843.1|EV264843
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGAGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtgaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGAGTAACTTCATTGCC
EST: gi|151409597|gb|EV279405.1|EV279405
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGAGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtgaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGAGTAACTTCATTGCC
EST: gi|193356410|gb|FK323123.1|FK323123
EST:     CTATTCCCTGGGGACTCTGAAGAATTAGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGAGTAACTTCATTGCC
genomic: CTATTCCCTGGGGACTCTG-AG-ATT-GATGAATTATTTAAAATATTCAGgtgaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGAGTAACTTCATTGCC
EST: gi|193328289|gb|FK294310.1|FK294310
EST:     CCTCTACTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGAGTAACTTCATTG
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtgaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGAGTAACTTCATTG
EST: gi|192300023|gb|FG991841.1|FG991841
EST:     CCTCTATTCCCTGGGGACTCTGAGACTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAA-TGAAGACACATGGCCTGGAGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtgaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGAGTAACTTCATTGCC