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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACAACATTGAACAAAGTGGAGAAATCATCTTTAATGCTTGCGTATGAGGTTAATGCAGTGGGTCCTATCTTAGTTATCAAGgtaacatcaatctaattttcattacaaaagttatttatttatctgtttatgatagttttagaagtaaatataggttctttatatgtatgagggagttata...

Basic information

species Glycine max
transcript GLYMA09G03440.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G03440.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G20760.1 (Arabidopsis thaliana), 5'ss of exon 4
AAACAACATTGAACAAAGTGGAGAAATCATCTTTAATGCTTGCGTATGAGGTTAATGCAGTGGGTCCTATCTTAGTTATCAAGgtaacatc----aatcta--attttcat-----------------tacaaa----agttatttatttatctgtttatgatagttttagaagtaaat-ataggttctttatatgtatgagggagttata----------------
|||||||||||||||| || || |||||||| || |||||||| || |||||||| || || ||||| ||  |||| || |||||||  ||    ||||     ||||  |                 | ||||    ||||||  || |   |||||    || |  | ||  |     || |  ||| |  |||    | |    | |                 
AAACAACATTGAACAAGGTCGAAAAATCATCGTTGATGCTTGCTTACGAGGTTAACGCTGTTGGTCCAATTCTAGTGATGAAGgtaagctcttccaatcctctgtttttgtaaagaacgctgcccctatgcaaatctaagttatgcatctccttgttttgcttactcgtggacatggcccattgactctatgaatgataaaagattctgtctttggctgtgttgcag

upper sequence: GLYMA09G03440.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv10s0003g05770.t01 (Vitis vinifera), 5'ss of exon 4
AAACAACATTGAACAAAGTGGAGAAATCATCTTTAATGCTTGCGTATGAGGTTAATGCAGTGGGTCCTATCTTAGTTATCAAGgtaacatcaatctaattttcattacaaaagttatttatttatctgtttatgatagttttagaagtaaatataggttcttta----tatgtatgagggagttata
|||||||| ||| ||||||| |||||||||||||  | || || |||||||||||||||||||||||||| ||||| ||||||||  |        ||  | |  |    || ||||    |||  |        | |   | ||   | ||||  || |||||    | ||  |||    |||   
AAACAACACTGAGCAAAGTGCAGAAATCATCTTTGCTTCTAGCCTATGAGGTTAATGCAGTGGGTCCTATTTTAGTGATCAAGgtg-cgctctctcaacctgcggttttcaacttatca--ttaattccaaggattcgagatggatccagatatttgtcctttaagattctgcctgattaggttga-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13479994|gb|BG509337.1|BG509337
EST:     TAATGCTTGCGTATGAGGTTAATGCAGTGGGTCCTATCTTAGTTATCAAG                         CATATGTGGCCTCTTCTAAAAGTAGGAGGAGGCCATGGGACTGGAAGAAGT
genomic: TAATGCTTGCGTATGAGGTTAATGCAGTGGGTCCTATCTTAGTTATCAAGgtaacatcaa ... ttaaaatcagCATATGTGGCCTCTTCTAAAAGTAGGAGGAGGCCATGGGACTGGAAGAAGT
EST: gi|14990094|gb|BI315767.1|BI315767
EST:     TAATGCTTGCGTATGAGGTTAATGCAGTGGGTCCTATCTTACCTATCAAG                         CATATGTGGCCTCTTCTAAAAGTAGGAGGAGGCCATGGGACTGGAAGAAGT
genomic: TAATGCTTGCGTATGAGGTTAATGCAGTGGGTCCTATCTTAGTTATCAAGgtaacatcaa ... ttaaaatcagCATATGTGGCCTCTTCTAAAAGTAGGAGGAGGCCATGGGACTGGAAGAAGT