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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCCAATGCAAGAGAGTTGCAAGAAGTATTAACTCTGTGGGTCTTTATGTTCCAGGGGGAACTGCTGTATTACCTTCAACAGCTTTGATGCTTGCAGTTgtaagttgaatagatatttctgttcctcttatgcctttcaatgttctacaattttgatattgtaatttgtatatttgtatttatcttgtcagaattagctgacggttaattattttgtttaccag

Basic information

species Glycine max
transcript GLYMA09G02960.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G02960.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G63890.2 (Arabidopsis thaliana), 5'ss of exon 6
AGTCCAATGCAAGAGAGTTGCAAGAAGTATTAACTCTGTGGGTCTTTATGTTCCAGGGGGAACTGCTGTATTACCTTCAACAGCTTTGATGCTTGCAGTTgtaagttgaatagatatttctgttcctcttatgcctttcaatgttctacaattttgatattgtaatttgtatatttgtatttatcttgtcagaattagctgacggttaattattttgtttaccag
 |||  ||| || || ||  |||||  ||||  |||||| ||||||||||| || || ||||| ||||| || || ||||| ||||||||||||||  |||||||||    |  | ||    ||   ||| | | ||||    |  |  |||||||   |  |||| | | | ||  | ||  |      | | ||  ||  | |                    
TGTCAGATGTAAAAGGGTGTCAAGATCTATTGGCTCTGTAGGTCTTTATGTGCCTGGTGGAACAGCTGTTTTGCCATCAACGGCTTTGATGCTTGCTATTgtaagttct-catgttttatacttttgcttgttcatttc----tcttgtaattttg---taataatct-tgtcttctttttccttaccctatacttctctctcag--------------------

upper sequence: GLYMA09G02960.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0166g00300.t01 (Vitis vinifera), 5'ss of exon 7
AGTCCAATGCAAGAGAGTTGCAAGAAGTATTAACTCTGTGGGTCTTTATGTTCCAGGGGGAACTGCTGTATTACCTTCAACAGCTTTGATGCTTGCAGTTgtaagttgaatagatatttctgttcc----tcttatgcctttcaatgttctacaattttgatattgtaatttgtatatttgt-atttatcttgtcagaattagctgacggttaattattttgtttaccag
 ||  |||||||  | |||||||| || |||   ||||| ||||||||||||||||| |||||||| || ||||||||||||||| |||||||| |||||||| |||||  | || |  |   ||      ||| |    ||||   | |||||| | |  ||||   ||       ||||| || | | ||| || | ||   ||||  | | |   ||   | |||||
TGTTAAATGCAAACGGGTTGCAAGGAGCATTGCTTCTGTTGGTCTTTATGTTCCAGGAGGAACTGCAGTGTTACCTTCAACAGCTCTGATGCTTTCAGTTgtaggttgatcaaatttaccaagtcaattgccttttttagttcatcttcctacaaatctt-tatttagatcctcgactttgtgatgtctgttgccacatttgattgacattgagtatgttctgtcaccag